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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA846486" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA846486 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3384095 3384095 PRJNA846486_P_NODE_74623_length_170_cov_1.388430_g74527_i0 PRJNA846486 74623 170 1.38843 2.360331 Tetradesmus obliquus 3088 Plants Plants 309 7.64e-80   NTclustered gi|1240946771|gb|KX756229.1| 3088 g74527 i0 99.412 21.0117647058824 170 1 100 0 1 170 80269 80100 Tetradesmus obliquus chloroplast, complete genome blastn 3572 309 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
8486202 8486202 PRJNA846486_P_NODE_96827_length_151_cov_28.754902_g96731_i0 PRJNA846486 96827 151 28.754902 43.41990202 Microglena monadina 47904 Plants Plants 52.8 0.012   NTclustered gi|952953016|gb|KT624790.1| 47904 g96731 i0 100 0.185430463576159 28 0 19 0 63 90 1738 1711 Microglena monadina clone contig-59 chloroplast, partial genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Microglena Microglena monadina
17411492 17411492 PRJNA846486_P_NODE_70434_length_174_cov_1.248000_g70338_i0 PRJNA846486 70434 174 1.248 2.17152 Chlamydomonas reinhardtii 3055 Plants Plants 126 8.5e-25   NTclustered gi|2082265001|ref|XM_001689780.2| 3055 g70338 i0 86.726 0.649425287356322 113 15 65 0 50 162 368 480 Chlamydomonas reinhardtii ribosomal protein L35 (CHLRE_14g617900v5), mRNA blastn 113 126 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
17808961 17808961 PRJNA846486_P_NODE_62774_length_182_cov_1.075188_g62678_i0 PRJNA846486 62774 182 1.075188 1.95684216 Eukaryota 2759 Plants Plants 292 8.38e-75   NTclustered gi|1714003650|gb|MN243923.1| 3079 g62678 i0 99.379 103.368131868132 161 1 100 0 22 182 58 218 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 18813 292 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
21235400 21235400 PRJNA846486_P_NODE_75937_length_169_cov_1.300000_g75841_i0 PRJNA846486 75937 169 1.3 2.197 Jenufa minuta 993092 Plants Plants 291 2.75e-74   NTclustered gi|959124355|ref|NC_028582.1| 993092 g75841 i0 97.633 1 169 4 100 0 1 169 159152 158984 Jenufa minuta culture-collection CAUP:H 8102 chloroplast, complete genome blastn 169 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae     Jenufa Jenufa minuta
24182990 24182990 PRJNA846486_P_NODE_10279_length_386_cov_1.323442_g10184_i0 PRJNA846486 10279 386 1.323442 5.10848612 Bryopsis 3128 Plants Plants 409 1.9e-109   NTclustered gi|969822372|gb|KT950953.1| 3129 g10184 i0 85.751 99.6450777202073 386 55 100 0 1 386 194 579 Bryopsis maxima actin gene, partial cds blastn 38463 409 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis maxima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;