RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA846110" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA846110 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9761232 9761232 PRJNA846110_P_NODE_8808_length_357_cov_2.330986_g8564_i0 PRJNA846110 8808 357 2.330986 8.32162002 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 623 5.709999999999999e-174   NTclustered gi|1124902734|gb|AY812498.2| 6182 g8564 i0 99.133 96.8935574229692 346 3 97 0 1 346 1375 1030 Schistosoma japonicum SJCHGC01615 protein mRNA, partial cds blastn 34591 628 0.99203821656051006 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
10159925 10159925 PRJNA846110_P_NODE_9708_length_344_cov_1.132841_g9464_i0 PRJNA846110 9708 344 1.132841 3.8969730400000002 Cratera 1336499 Platyhelminthes Platyhelminthes 62.1 5.41e-5   NTclustered gi|1883890708|gb|MT468615.1| 1336507 g9464 i0 81.818 5.14825581395349 77 11 22 3 3 76 395 471 Cratera crioula isolate F3709 Rho2 GTPase gene, partial cds blastn 1771 62.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Geoplanidae Cratera Cratera crioula
12312276 12312276 PRJNA846110_P_NODE_29090_length_242_cov_1.366864_g28845_i0 PRJNA846110 29090 242 1.366864 3.30781088 Schistosoma haematobium 6185 Platyhelminthes Platyhelminthes 161 3.47e-35   NTclustered gi|2318772277|ref|XM_051216703.1| 6185 g28845 i0 79.736 13.5661157024793 227 42 93 4 11 235 480 704 Schistosoma haematobium Tubulin alpha-3C/D chain (TUBA3D_3), mRNA blastn 3283 161 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma haematobium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;