RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA846110" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA846110 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3783216 3783216 PRJNA846110_P_NODE_28483_length_243_cov_0.905882_g28238_i0 PRJNA846110 28483 243 0.905882 2.20129326 Gemmata 113 Bacteria Bacteria 448 2.39e-121   NTclustered gi|1727537522|gb|CP042911.1| 114 g28238 i0 100 114.555555555556 242 0 99 0 2 243 1038325 1038084 Gemmata obscuriglobus strain DSM 5831 chromosome, complete genome blastn 27837 448 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata obscuriglobus
4661561 4661561 PRJNA846110_P_NODE_30544_length_237_cov_2.542683_g30299_i0 PRJNA846110 30544 237 2.542683 6.02615871 Phycisphaera mikurensis 547188 Bacteria Bacteria 174 4.3499999999999997e-39   NTclustered gi|381385343|dbj|AP012338.1| 1142394 g30299 i0 80.258 16.4092827004219 233 44 98 2 4 235 2591861 2592092 Phycisphaera mikurensis NBRC 102666 DNA, complete genome blastn 3889 174 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae Phycisphaera Phycisphaera mikurensis
11435137 11435137 PRJNA846110_P_NODE_27729_length_244_cov_0.900585_g27484_i0 PRJNA846110 27729 244 0.900585 2.1974274 Gemmata 113 Bacteria Bacteria 276 1.1999999999999998e-69   NTclustered gi|1727537522|gb|CP042911.1| 114 g27484 i0 87.008 6.68852459016393 254 22 100 9 1 244 1130589 1130841 Gemmata obscuriglobus strain DSM 5831 chromosome, complete genome blastn 1632 278 0.992805755395683 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata obscuriglobus
13586783 13586783 PRJNA846110_P_NODE_30751_length_232_cov_2.465409_g30506_i0 PRJNA846110 30751 232 2.465409 5.71974888 Urbifossiella limnaea 2528023 Bacteria Bacteria 213 8.99e-51   NTclustered gi|1712585314|gb|CP036273.1| 2528023 g30506 i0 84.163 0.952586206896552 221 33 95 2 13 232 5942494 5942275 Urbifossiella limnaea strain ETA_A1 chromosome, complete genome blastn 221 213 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Urbifossiella Urbifossiella limnaea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;