RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA846110" and tax_phylum = "Cnidaria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA846110 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5059241 5059241 PRJNA846110_P_NODE_1404_length_853_cov_2.473077_g1198_i0 PRJNA846110 1404 853 2.473077 21.09534681 Acropora 6127 Cnidaria other_Eukaryota 93.5 5.06e-14   NTclustered gi|2113996306|ref|XM_029346466.2| 45264 g1198 i0 80.833 5.35287221570926 120 21 14 2 8 126 146 264 PREDICTED: Acropora millepora 26S proteasome complex subunit SEM1-like (LOC114966557), mRNA blastn 4566 93.5 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Acroporidae Acropora Acropora millepora
21235044 21235044 PRJNA846110_P_NODE_15697_length_284_cov_1.289100_g15452_i0 PRJNA846110 15697 284 1.2891 3.661044 Myxidium streisingeri 1542451 Cnidaria other_Eukaryota 525 1.2899999999999994e-144   NTclustered gi|681870004|gb|KM001687.1| 1542451 g15452 i0 100 5 284 0 100 0 1 284 1003 720 Myxidium streisingeri clone ZF12 18S small subunit ribosomal RNA gene, partial sequence blastn 1420 525 1 Eukaryota Opisthokonta Metazoa Cnidaria Myxozoa Bivalvulida Myxidiidae Myxidium Myxidium streisingeri
22509935 22509935 PRJNA846110_P_NODE_26098_length_246_cov_1.393064_g25853_i0 PRJNA846110 26098 246 1.393064 3.42693744 Rhopilema esculentum 499914 Cnidaria other_Eukaryota 187 5.839999999999998e-43   NTclustered gi|2729091053|ref|XM_065208214.1| 499914 g25853 i0 84.184 5.90650406504065 196 27 79 4 3 196 509 702 PREDICTED: Rhopilema esculentum ras-related protein Rab-2 (LOC135690611), mRNA blastn 1453 187 1 Eukaryota Opisthokonta Metazoa Cnidaria Scyphozoa Rhizostomeae Rhizostomatidae Rhopilema Rhopilema esculentum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;