RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA846110" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA846110 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2108525 2108525 PRJNA846110_P_NODE_2442_length_663_cov_1.964407_g2212_i0 PRJNA846110 2442 663 1.964407 13.02401841 Chlamydiales bacterium QZY 2803004 Bacteria Bacteria 795 0   NTclustered gi|1955632013|gb|MW471098.1| 2803004 g2212 i0 91.552 176.419306184012 580 43 87 4 86 663 37 612 Chlamydiales bacterium QZY 16S ribosomal RNA gene, partial sequence blastn 116966 795 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium QZY
2506879 2506879 PRJNA846110_P_NODE_5122_length_460_cov_1.981912_g4878_i0 PRJNA846110 5122 460 1.981912 9.1167952 Waddlia 71666 Bacteria Bacteria 326 2.38e-84   NTclustered gi|470485904|ref|NR_076723.1| 71667 g4878 i0 80.499 182.713043478261 441 72 95 10 1 436 1326 1757 Waddlia chondrophila strain WSU 86-1044 23S ribosomal RNA gene, complete sequence blastn 84048 326 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Waddliaceae Waddlia Waddlia chondrophila
12312346 12312346 PRJNA846110_P_NODE_8750_length_358_cov_1.877193_g8506_i0 PRJNA846110 8750 358 1.877193 6.72035094 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 252 3.11e-62   NTclustered gi|1869331976|gb|CP058704.1| 2052176 g8506 i0 79.614 147.237430167598 363 64 100 10 1 358 835896 836253 Parachlamydiaceae bacterium isolate SSA5 chromosome blastn 52711 252 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
13586810 13586810 PRJNA846110_P_NODE_711_length_1185_cov_2.313849_g573_i0 PRJNA846110 711 1185 2.313849 27.41911065 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 1009 0   NTclustered gi|2874253811|emb|OY969795.1| 464461 g573 i0 82.794 195.95864978903 1174 159 97 38 38 1185 2059748 2058592 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 232211 1009 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;