RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA846110" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJNA846110 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7211168 7211168 PRJNA846110_P_NODE_23026_length_250_cov_1.898305_g22781_i0 PRJNA846110 23026 250 1.898305 4.7457625 Desmochloris mollenhaueri 578869 Plants Plants 462 8.83e-126   NTclustered gi|313476264|emb|FM882217.1| 578869 g22781 i0 100 99.992 250 0 100 0 1 250 606 855 Desmochloris sp. TP-2008 partial 18S rRNA gene, ITS1, 5.8S rRNA and ITS2, strain CCAP 6006/2 blastn 24998 462 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris mollenhaueri
8485900 8485900 PRJNA846110_P_NODE_2347_length_675_cov_13.252492_g2117_i0 PRJNA846110 2347 675 13.252492 89.454321 Chlamydomonas reinhardtii 3055 Plants Plants 58.4 0.001   NTclustered gi|2082259816|ref|XM_043068258.1| 3055 g2117 i0 97.059 0.0992592592592593 34 1 5 0 180 213 3302 3335 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g512650v5), mRNA blastn 67 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
13586662 13586662 PRJNA846110_P_NODE_20011_length_263_cov_1.394737_g19766_i0 PRJNA846110 20011 263 1.394737 3.66815831 Desmochloris halophila 138176 Plants Plants 425 1.2299999999999999e-114   NTclustered gi|371782086|emb|HE610118.1| 138176 g19766 i0 95.833 66.6045627376426 264 10 100 1 1 263 3714 3977 Desmochloris halophila 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain UTEX 2073 blastn 17517 425 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris halophila
13586706 13586706 PRJNA846110_P_NODE_23271_length_250_cov_0.870056_g23026_i0 PRJNA846110 23271 250 0.870056 2.17514 Microspora stagnorum 163317 Plants Plants 405 1.51e-108   NTclustered gi|563940464|ref|NC_022862.1| 163317 g23026 i0 96.341 2.952 246 9 98 0 4 249 63286 63041 Microspora stagnorum culture-collection SAG:51.86 mitochondrion, complete genome blastn 738 405 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae   Microsporaceae Microspora Microspora stagnorum
22908844 22908844 PRJNA846110_P_NODE_23198_length_250_cov_0.870056_g22953_i0 PRJNA846110 23198 250 0.870056 2.17514 Desmochloris 138596 Plants Plants 462 8.83e-126   NTclustered gi|313476264|emb|FM882217.1| 578869 g22953 i0 100 100.06 250 0 100 0 1 250 75 324 Desmochloris sp. TP-2008 partial 18S rRNA gene, ITS1, 5.8S rRNA and ITS2, strain CCAP 6006/2 blastn 25015 462 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris mollenhaueri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;