RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA846110" and tax_clade = "Sar"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA846110 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2108611 2108611 PRJNA846110_P_NODE_4122_length_511_cov_2.623288_g3878_i0 PRJNA846110 4122 511 2.623288 13.40500168 Rosculus sp. 2231160 SAR_Eukaryotes SAR_Eukaryotes 944 0   NTclustered gi|1402550473|gb|MH488759.1| 2231160 g3878 i0 100 5.09393346379648 511 0 100 0 1 511 558 48 Rosculus sp. isolate CSA small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 2603 944 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp.
3783221 3783221 PRJNA846110_P_NODE_2983_length_603_cov_1.503774_g2746_i0 PRJNA846110 2983 603 1.503774 9.06775722 Verrucomonas 2545269 SAR_Eukaryotes SAR_Eukaryotes 204 1.5599999999999999e-47   NTclustered gi|290760488|gb|GQ144691.1| 629763 g2746 i0 82.041 25.2437810945274 245 38 40 6 221 463 1487 1247 Cercozoa sp. CC-2009e large subunit ribosomal RNA gene, partial sequence blastn 15222 204 1 Eukaryota Sar   Cercozoa Thecofilosea Ventricleftida   Verrucomonas Verrucomonas bifida
7211151 7211151 PRJNA846110_P_NODE_21406_length_256_cov_1.415301_g21161_i0 PRJNA846110 21406 256 1.415301 3.62317056 Frontonia depressa 3042678 SAR_Eukaryotes SAR_Eukaryotes 250 7.69e-62   NTclustered gi|2496410947|gb|OQ869835.1| 3042678 g21161 i0 85.141 90.9296875 249 31 96 4 1 246 1549 1794 Frontonia depressa isolate S229 large subunit ribosomal RNA gene, partial sequence blastn 23278 250 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Frontoniidae Frontonia Frontonia depressa
9760990 9760990 PRJNA846110_P_NODE_12848_length_305_cov_2.086207_g12603_i0 PRJNA846110 12848 305 2.086207 6.36293135 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 226 1.58e-54   NTclustered gi|1620114052|ref|XM_028670187.1| 5849 g12603 i0 83.401 20.783606557377 247 38 81 3 27 272 704 460 Plasmodium gallinaceum tubulin beta chain, putative (PGAL8A_00384800), partial mRNA blastn 6339 226 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
9761102 9761102 PRJNA846110_P_NODE_2308_length_682_cov_2.003284_g2080_i0 PRJNA846110 2308 682 2.003284 13.66239688 Rosculus sp. 2231160 SAR_Eukaryotes SAR_Eukaryotes 1146 0   NTclustered gi|1402550473|gb|MH488759.1| 2231160 g2080 i0 96.816 16.9780058651026 691 12 100 8 1 682 704 1393 Rosculus sp. isolate CSA small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 11579 1146 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp.
23785471 23785471 PRJNA846110_P_NODE_6099_length_423_cov_1.974286_g5855_i0 PRJNA846110 6099 423 1.974286 8.35122978 Rosculus sp. 2231160 SAR_Eukaryotes SAR_Eukaryotes 782 0   NTclustered gi|1402550473|gb|MH488759.1| 2231160 g5855 i0 100 48.5886524822695 423 0 100 0 1 423 2108 1686 Rosculus sp. isolate CSA small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 20553 782 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;