RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA846086" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA846086 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3383643 3383643 PRJNA846086_P_NODE_2003_length_281_cov_1.480769_g1937_i0 PRJNA846086 2003 281 1.480769 4.16096089 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 520 5.909999999999999e-143   NTclustered gi|166048041|emb|CU364162.1| 100861 g1937 i0 100 99.3487544483986 281 0 100 0 1 281 525 245 Aphanomyces euteiches cDNA blastn 27917 520 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
3383703 3383703 PRJNA846086_P_NODE_5603_length_241_cov_0.916667_g5537_i0 PRJNA846086 5603 241 0.916667 2.20916747 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 344 3.199999999999999e-90   NTclustered gi|166035484|emb|CU354363.1| 100861 g5537 i0 92.531 100 241 17 100 1 1 241 788 549 Aphanomyces euteiches cDNA blastn 24100 344 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
7211001 7211001 PRJNA846086_P_NODE_4246_length_246_cov_0.890173_g4180_i0 PRJNA846086 4246 246 0.890173 2.18982558 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 438 1.4599999999999996e-118   NTclustered gi|166044546|emb|CU367455.1| 100861 g4180 i0 98.78 49.5569105691057 246 3 100 0 1 246 125 370 Aphanomyces euteiches cDNA blastn 12191 438 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
9760881 9760881 PRJNA846086_P_NODE_1588_length_301_cov_1.350877_g1522_i0 PRJNA846086 1588 301 1.350877 4.06613977 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 351 2.47e-92   NTclustered gi|673023095|ref|XM_008867287.1| 157072 g1522 i0 92.946 8.48837209302326 241 17 80 0 61 301 453 213 Aphanomyces invadans 40S ribosomal protein S15 partial mRNA blastn 2555 351 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
17411055 17411055 PRJNA846086_P_NODE_3534_length_249_cov_0.875000_g3468_i0 PRJNA846086 3534 249 0.875 2.17875 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 444 3.18e-120   NTclustered gi|166046515|emb|CU367632.1| 100861 g3468 i0 98.795 100.128514056225 249 3 100 0 1 249 324 76 Aphanomyces euteiches cDNA blastn 24932 444 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;