RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA846086" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 7 ✖

bioproject 1

  • PRJNA846086 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3383651 3383651 PRJNA846086_P_NODE_2563_length_263_cov_5.847368_g2497_i0 PRJNA846086 2563 263 5.847368 15.37857784 Olea europaea 4146 Plants Plants 303 6e-78   NTclustered gi|1279025397|ref|XM_023016129.1| 158386 g2497 i0 97.727 81.5513307984791 176 4 67 0 88 263 1 176 PREDICTED: Olea europaea var. sylvestris uncharacterized LOC111390994 (LOC111390994), mRNA blastn 21448 303 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Lamiales Oleaceae Olea Olea europaea
5936064 5936064 PRJNA846086_P_NODE_465_length_555_cov_1.483402_g399_i0 PRJNA846086 465 555 1.483402 8.2328811 Wurfbainia villosa 199627 Plants Plants 54.7 0.015   NTclustered gi|1000829444|gb|KU572444.1| 199627 g399 i0 100 0.104504504504505 29 0 5 0 38 66 379 407 Amomum villosum HMGR protein (HMGR) mRNA, complete cds blastn 58 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Zingiberales Zingiberaceae Wurfbainia Wurfbainia villosa
8485673 8485673 PRJNA846086_P_NODE_1927_length_284_cov_1.360190_g1861_i0 PRJNA846086 1927 284 1.36019 3.8629396 Zea mays 4577 Plants Plants 394 3.78e-105   NTclustered gi|55741072|gb|AY664416.1| 4577 g1861 i0 91.901 385.37676056338 284 20 99 2 1 281 144670 144953 Zea mays cultivar Mo17 locus bz, complete sequence blastn 109447 394 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
14860757 14860757 PRJNA846086_P_NODE_2772_length_258_cov_1.664865_g2706_i0 PRJNA846086 2772 258 1.664865 4.2953517 Raphanus sativus 3726 Plants Plants 460 3.29e-125   NTclustered gi|2515515931|ref|XM_018616845.2| 3726 g2706 i0 98.837 75.8565891472868 258 3 100 0 1 258 60 317 PREDICTED: Raphanus sativus hypersensitive-induced response protein 2 (LOC108843614), transcript variant X3, mRNA blastn 19571 460 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Raphanus Raphanus sativus
18684114 18684114 PRJNA846086_P_NODE_2435_length_268_cov_1.071795_g2369_i0 PRJNA846086 2435 268 1.071795 2.8724106 Brassica napus 3708 Plants Plants 496 9.429999999999999e-136   NTclustered gi|2258186511|ref|XR_007339525.1| 3708 g2369 i0 100 5.04850746268657 268 0 100 0 1 268 1626 1893 PREDICTED: Brassica napus uncharacterized LOC125609017 (LOC125609017), ncRNA blastn 1353 496 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica napus
24182826 24182826 PRJNA846086_P_NODE_4779_length_244_cov_0.900585_g4713_i0 PRJNA846086 4779 244 0.900585 2.1974274 root 1 Root_unresolved Root_unresolved 446 8.639999999999999e-121   NTclustered gi|417451531|gb|KC129717.1| 75702 g4713 i0 99.59 98.4795081967213 244 1 100 0 1 244 986 1229 Populus euphratica clone BIBAC2A1F6, complete sequence blastn 24029 446 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malpighiales Salicaceae Populus Populus euphratica
25457810 25457810 PRJNA846086_P_NODE_3700_length_248_cov_1.760000_g3634_i0 PRJNA846086 3700 248 1.76 4.3648 Brassica 3705 Plants Plants 418 1.9199999999999994e-112   NTclustered gi|2258155075|ref|XM_048746290.1| 3708 g3634 i0 97.177 42.2661290322581 248 6 100 1 1 248 2241 1995 PREDICTED: Brassica napus probable E3 ubiquitin-protein ligase RZFP34 (LOC106382650), transcript variant X2, mRNA blastn 10482 418 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica napus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;