RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA841653" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA841653 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6334883 6334883 PRJNA841653_P_NODE_43005_length_251_cov_28.129213_g42331_i0 PRJNA841653 43005 251 28.129213 70.60432463 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 82.4 2.9e-11   NTclustered gi|1858375043|gb|MT622645.1| 84095 g42331 i0 82.609 38.2151394422311 92 16 37 0 8 99 5960 6051 Graffilla buccinicola small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9592 82.4 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Graffillidae Graffilla Graffilla buccinicola
11434607 11434607 PRJNA841653_P_NODE_44629_length_250_cov_3348.129944_g43955_i0 PRJNA841653 44629 250 3348.129944 8370.32486 Rhabditophora 147100 Platyhelminthes Platyhelminthes 176 1.2899999999999999e-39   NTclustered gi|28273268|gb|AY157156.1| 84079 g43955 i0 89.51 51.704 143 9 57 5 99 240 2894 2757 Geocentrophora wagini 28S large subunit ribosomal RNA gene, partial sequence blastn 12926 176 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Lecithoepitheliata Prorhynchidae Geocentrophora Geocentrophora wagini
18681496 18681496 PRJNA841653_P_NODE_22155_length_346_cov_1.457875_g21481_i0 PRJNA841653 22155 346 1.457875 5.0442475 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 204 8.539999999999999e-48   NTclustered gi|1116517974|gb|AY485340.2| 6183 g21481 i0 83.186 82.2312138728324 226 34 65 4 10 233 6 229 Schistosoma mansoni ubiquitin mRNA, partial cds blastn 28452 204 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
20357138 20357138 PRJNA841653_P_NODE_38056_length_267_cov_1.438144_g37382_i0 PRJNA841653 38056 267 1.438144 3.83984448 Monogenea 37945 Platyhelminthes Platyhelminthes 99 3.09e-16   NTclustered gi|28273281|gb|AY157169.1| 82849 g37382 i0 83.81 10.4794007490637 105 15 39 2 1 105 2439 2337 Diclidophora denticulata 28S large subunit ribosomal RNA gene, partial sequence blastn 2798 99 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Mazocraeidea Diclidophoridae Diclidophora Diclidophora denticulata
22507838 22507838 PRJNA841653_P_NODE_63978_length_226_cov_24.732026_g63304_i0 PRJNA841653 63978 226 24.732026 55.89437876 Temnosewellia minor 216952 Platyhelminthes Platyhelminthes 150 6.93e-32   NTclustered gi|28273276|gb|AY157164.1| 216952 g63304 i0 89.167 55.8318584070796 120 13 53 0 3 122 2666 2785 Temnosewellia minor 28S large subunit ribosomal RNA gene, partial sequence blastn 12618 150 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Temnocephalidae Temnosewellia Temnosewellia minor

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;