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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA841653" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA841653 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2105844 2105844 PRJNA841653_P_NODE_29382_length_300_cov_2.933921_g28708_i0 PRJNA841653 29382 300 2.933921 8.801763 Peronospora myosotidis 162098 SAR_Eukaryotes SAR_Eukaryotes 518 2.29e-142   NTclustered gi|23306490|gb|AY035473.1| 162098 g28708 i0 99.301 98.42 286 2 95 0 1 286 286 1 Peronospora myosotidis isolate MG 1-4 large subunit ribosomal RNA gene, partial sequence blastn 29526 518 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora myosotidis
5933614 5933614 PRJNA841653_P_NODE_31705_length_289_cov_2.750000_g31031_i0 PRJNA841653 31705 289 2.75 7.9475 Peronospora sp. 1982665 SAR_Eukaryotes SAR_Eukaryotes 531 2.82e-146   NTclustered gi|2703611743|gb|PP531600.1| 1982665 g31031 i0 100 99.3148788927336 287 0 99 0 1 287 598 312 Peronospora sp. voucher GLM-F68067 large subunit ribosomal RNA gene, partial sequence blastn 28702 531 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora sp.
8483626 8483626 PRJNA841653_P_NODE_52087_length_246_cov_0.890173_g51413_i0 PRJNA841653 52087 246 0.890173 2.18982558 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 63.9 1.03e-5   NTclustered gi|669170970|ref|XM_008622612.1| 1156394 g51413 i0 93.182 5.35365853658537 44 1 17 2 28 70 265 223 Saprolegnia diclina VS20 rab family, other partial mRNA blastn 1317 63.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
9758598 9758598 PRJNA841653_P_NODE_39188_length_263_cov_2.278947_g38514_i0 PRJNA841653 39188 263 2.278947 5.99363061 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 313 9.979999999999999e-81   NTclustered gi|325195057|emb|FR825852.1| 890382 g38514 i0 89.879 82.6882129277567 247 19 92 5 17 259 108 352 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 21747 313 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
11434412 11434412 PRJNA841653_P_NODE_2429_length_1148_cov_28.598140_g1997_i0 PRJNA841653 2429 1148 28.59814 328.3066472 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 351 1.03e-91   NTclustered gi|533310373|ref|NC_022179.1| 74557 g1997 i0 81.004 35.9721254355401 458 74 39 10 487 939 13608 14057 Thraustotheca clavata mitochondrion, complete genome blastn 41296 351 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
13583653 13583653 PRJNA841653_P_NODE_11271_length_496_cov_2.872340_g10602_i0 PRJNA841653 11271 496 2.87234 14.2468064 Paralagenidium karlingii 1440115 SAR_Eukaryotes SAR_Eukaryotes 141 9.999999999999999e-29   NTclustered gi|2554484921|ref|NC_080886.1| 1440115 g10602 i0 90.09 21.9173387096774 111 8 22 3 345 454 41764 41656 Paralagenidium karlingii isolate 19-09020 mitochondrion, complete genome blastn 10871 141 1 Eukaryota Sar   Oomycota Peronosporomycetes     Paralagenidium Paralagenidium karlingii
14858542 14858542 PRJNA841653_P_NODE_40372_length_259_cov_2.424731_g39698_i0 PRJNA841653 40372 259 2.424731 6.28005329 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 97.1 1.07e-15   NTclustered gi|813142527|ref|XM_012343931.1| 695850 g39698 i0 87.805 1.16216216216216 82 10 32 0 65 146 1128 1209 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L3 mRNA blastn 301 97.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
19082469 19082469 PRJNA841653_P_NODE_61195_length_241_cov_0.916667_g60521_i0 PRJNA841653 61195 241 0.916667 2.20916747 root 1 Root_unresolved Root_unresolved 84.2 7.69e-12   NTclustered gi|189084724|gb|BT032242.1| 4784 g60521 i0 91.803 20.954356846473 61 4 25 1 71 131 152 211 Phytophthora capsici clone CBOT161-B07 mRNA sequence blastn 5050 84.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
23783066 23783066 PRJNA841653_P_NODE_48259_length_248_cov_1.542857_g47585_i0 PRJNA841653 48259 248 1.542857 3.82628536 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 65.8 2.88e-6   NTclustered gi|166035135|emb|CU348968.1| 100861 g47585 i0 87.097 0.862903225806452 62 2 25 5 49 110 133 78 Aphanomyces euteiches cDNA blastn 214 65.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
24182295 24182295 PRJNA841653_P_NODE_28039_length_308_cov_1.280851_g27365_i0 PRJNA841653 28039 308 1.280851 3.94502108 root 1 Root_unresolved Root_unresolved 171 7.61e-38   NTclustered gi|145932422|ref|NC_009384.1| 164328 g27365 i0 79.2 10.1038961038961 250 48 81 3 30 277 22589 22836 Phytophthora ramorum mitochondrion, complete genome blastn 3112 171 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;