RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA841653" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA841653 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2506391 2506391 PRJNA841653_P_NODE_47782_length_249_cov_0.875000_g47108_i0 PRJNA841653 47782 249 0.875 2.17875 Gemmatirosa 1706036 Bacteria Bacteria 252 2.07e-62   NTclustered gi|2874253995|emb|OY970320.1| 246130 g47108 i0 88.517 73.9277108433735 209 22 84 2 30 237 231424 231631 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 18408 252 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
3782763 3782763 PRJNA841653_P_NODE_49763_length_248_cov_0.828571_g49089_i0 PRJNA841653 49763 248 0.828571 2.05485608 Gemmatirosa 1706036 Bacteria Bacteria 219 2.0899999999999994e-52   NTclustered gi|2874253789|emb|OY969773.1| 412054 g49089 i0 83.265 71.1209677419355 245 33 97 8 2 242 421109 420869 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 17638 219 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
11034571 11034571 PRJNA841653_P_NODE_53289_length_246_cov_0.890173_g52615_i0 PRJNA841653 53289 246 0.890173 2.18982558 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 91.6 4.71e-14   NTclustered gi|2874254107|emb|OY970192.1| 412054 g52615 i0 90 74.3333333333333 70 7 28 0 176 245 1593291 1593222 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 18286 91.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16133141 16133141 PRJNA841653_P_NODE_31333_length_291_cov_1.408257_g30659_i0 PRJNA841653 31333 291 1.408257 4.09802787 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 442 1.3699999999999994e-119   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g30659 i0 94.464 69.6701030927835 289 12 99 4 1 287 2075022 2074736 Gemmatimonas phototrophica strain AP64, complete genome blastn 20274 442 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
21232556 21232556 PRJNA841653_P_NODE_34017_length_281_cov_1.350962_g33343_i0 PRJNA841653 34017 281 1.350962 3.79620322 Gaopeijia maritima 3119007 Bacteria Bacteria 150 8.929999999999999e-32   NTclustered gi|2716997671|gb|CP144380.1| 3119007 g33343 i0 90.517 4.5729537366548 116 7 41 2 17 130 725216 725329 Gaopeijia maritima strain DH-78 chromosome, complete genome blastn 1285 150 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Gaopeijiales Gaopeijiaceae Gaopeijia Gaopeijia maritima
23783256 23783256 PRJNA841653_P_NODE_60479_length_242_cov_0.911243_g59805_i0 PRJNA841653 60479 242 0.911243 2.20520806 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 137 5.85e-28   NTclustered gi|575456455|gb|CP007128.1| 861299 g59805 i0 91.919 1.67355371900826 99 7 40 1 4 101 2192805 2192707 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 405 137 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;