RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA841653" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA841653 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
830251 830251 PRJNA841653_P_NODE_23021_length_339_cov_2.597744_g22347_i0 PRJNA841653 23021 339 2.597744 8.80635216 Polymyxa betae 41456 SAR_Eukaryotes SAR_Eukaryotes 569 7.149999999999998e-158   NTclustered gi|2127897050|ref|NC_059071.1| 41456 g22347 i0 97.313 81.6017699115044 335 9 99 0 1 335 16002 15668 Polymyxa betae isolate A26-41 genome assembly, organelle: mitochondrion blastn 27663 569 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa betae
4658518 4658518 PRJNA841653_P_NODE_16344_length_405_cov_12.737952_g15672_i0 PRJNA841653 16344 405 12.737952 51.5887056 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 285 3.5199999999999995e-72   NTclustered gi|1031965310|gb|KX011115.1| 37360 g15672 i0 95.109 40.5703703703704 184 4 45 3 2 185 7721 7899 Plasmodiophora brassicae isolate AT 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16431 285 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
21233064 21233064 PRJNA841653_P_NODE_63137_length_236_cov_47.533742_g62463_i0 PRJNA841653 63137 236 47.533742 112.17963112 Woronina pythii 1484336 SAR_Eukaryotes SAR_Eukaryotes 239 1.5100000000000002e-58   NTclustered gi|1031965309|gb|KX011114.1| 1484336 g62463 i0 85.593 55.1271186440678 236 25 98 7 5 236 4707 4937 Woronina pythii isolate PD0236 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13010 239 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Woronina Woronina pythii
23783327 23783327 PRJNA841653_P_NODE_63979_length_226_cov_16.810458_g63305_i0 PRJNA841653 63979 226 16.810458 37.99163508 Spongospora sp. HH-2014 1483711 SAR_Eukaryotes SAR_Eukaryotes 363 8.179999999999999e-96   NTclustered gi|605052146|gb|KJ150290.1| 1483711 g63305 i0 96.38 129.057522123894 221 6 98 1 1 221 5222 5004 Spongospora sp. HH-2014 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 29167 363 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Spongospora Spongospora sp. HH-2014
25457216 25457216 PRJNA841653_P_NODE_20920_length_356_cov_41.477032_g20246_i0 PRJNA841653 20920 356 41.477032 147.65823392 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 584 2.689999999999999e-162   NTclustered gi|15088524|gb|AF310902.1|AF310902 41456 g20246 i0 96.866 76.8820224719101 351 8 98 2 8 356 41 390 Polymyxa betae 18S small subunit ribosomal RNA gene, partial sequence blastn 27370 584 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa betae
25457564 25457564 PRJNA841653_P_NODE_64180_length_219_cov_24.541096_g63506_i0 PRJNA841653 64180 219 24.541096 53.74500024 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 379 7.829999999999998e-101   NTclustered gi|15088524|gb|AF310902.1|AF310902 41456 g63506 i0 98.598 96.7305936073059 214 3 98 0 5 218 1466 1679 Polymyxa betae 18S small subunit ribosomal RNA gene, partial sequence blastn 21184 379 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa betae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;