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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA841653" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA841653 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
830939 830939 PRJNA841653_P_NODE_5881_length_704_cov_22.459588_g5255_i0 PRJNA841653 5881 704 22.459588 158.11549952 Polychytrium aggregatum 110093 Fungi Fungi 359 3.7e-94   NTclustered gi|311235598|ref|NG_027613.1| 110093 g5255 i0 76.816 100.637784090909 716 118 99 34 9 704 1328 2015 Polychytrium aggregatum JEL 109 28S rRNA gene, partial sequence; from reference material blastn 70849 359 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
6334516 6334516 PRJNA841653_P_NODE_10285_length_521_cov_253.301339_g9618_i0 PRJNA841653 10285 521 253.301339 1319.69997619 Nowakowskiella 109880 Fungi Fungi 159 2.92e-34   NTclustered gi|194241380|gb|EU828507.1| 546781 g9618 i0 96.875 17.8253358925144 96 2 18 1 9 104 214 308 Nowakowskiella sp. JH FR 28S large subunit ribosomal RNA gene, partial sequence blastn 9287 159 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella sp. JH FR
7208362 7208362 PRJNA841653_P_NODE_18066_length_384_cov_2.401929_g17394_i0 PRJNA841653 18066 384 2.401929 9.22340736 Operculomyces laminatus 382552 Fungi Fungi 209 2.05e-49   NTclustered gi|1866582516|gb|MT730691.1| 382552 g17394 i0 80.851 73.5911458333333 282 41 73 6 96 376 3961 3692 Operculomyces laminatus isolate JEL0223 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 28259 209 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Operculomyces Operculomyces laminatus
7208599 7208599 PRJNA841653_P_NODE_29366_length_300_cov_8.577093_g28692_i0 PRJNA841653 29366 300 8.577093 25.731279 Spizellomyces punctatus 109760 Fungi Fungi 248 3.32e-61   NTclustered gi|1027029543|ref|XR_001677161.1| 645134 g28692 i0 92.982 44.75 171 10 56 2 129 297 4084 3914 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11002), rRNA blastn 13425 248 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
7208652 7208652 PRJNA841653_P_NODE_31626_length_290_cov_1.165899_g30952_i0 PRJNA841653 31626 290 1.165899 3.3811071 Fimicolochytrium jonesii 1396493 Fungi Fungi 148 3.33e-31   NTclustered gi|2432050258|ref|XM_053069071.1| 1396493 g30952 i0 83.03 39.0551724137931 165 26 57 2 71 234 162 325 Fimicolochytrium jonesii component of cytosolic 80S ribosome and 40S small subunit (EV422DRAFT_512505), mRNA blastn 11326 148 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
9758331 9758331 PRJNA841653_P_NODE_27148_length_313_cov_1.250000_g26474_i0 PRJNA841653 27148 313 1.25 3.9125 Spizellomyces punctatus 109760 Fungi Fungi 132 3.66e-26   NTclustered gi|1027029543|ref|XR_001677161.1| 645134 g26474 i0 86.885 35.0830670926518 122 10 38 6 4 122 3914 4032 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11002), rRNA blastn 10981 132 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
11434365 11434365 PRJNA841653_P_NODE_20569_length_359_cov_327.146853_g19895_i0 PRJNA841653 20569 359 327.146853 1174.45720227 Opisthokonta 33154 Fungi Fungi 134 1.18e-26   NTclustered gi|612507318|gb|KF586842.1| 1486924 g19895 i0 89.216 11.924791086351 102 11 28 0 244 345 6129 6230 Gromochytrium mamkaevae strain CALU x-51 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4281 134 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Gromochytriales Gromochytriaceae Gromochytrium Gromochytrium mamkaevae
20357004 20357004 PRJNA841653_P_NODE_25416_length_323_cov_20.968000_g24742_i0 PRJNA841653 25416 323 20.968 67.72664 Powellomycetaceae 1134080 Fungi Fungi 518 2.49e-142   NTclustered gi|1866582454|gb|MT730629.1| 109894 g24742 i0 95.925 98.8390092879257 319 13 99 0 1 319 4461 4143 Geranomyces variabilis isolate Barr350 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 31925 518 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Geranomyces Geranomyces variabilis
25056941 25056941 PRJNA841653_P_NODE_50140_length_247_cov_0.885057_g49466_i0 PRJNA841653 50140 247 0.885057 2.18609079 Polychytrium aggregatum 110093 Fungi Fungi 200 7.529999999999999e-47   NTclustered gi|2432134333|ref|XM_053109764.1| 110093 g49466 i0 81.893 91.4048582995951 243 38 97 3 1 240 605 366 Polychytrium aggregatum 60S ribosomal protein I1-a (BJ171DRAFT_491703), mRNA blastn 22577 200 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
25457403 25457403 PRJNA841653_P_NODE_40680_length_258_cov_26.351351_g40006_i0 PRJNA841653 40680 258 26.351351 67.98648558 Opisthokonta 33154 Fungi Fungi 89.8 1.79e-13   NTclustered gi|1866582793|gb|MT730968.1| 4816 g40006 i0 100 18.6007751937984 48 0 19 0 209 256 5599 5646 Spizellomyces acuminatus isolate PLAUS Ad 20 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4799 89.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces acuminatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;