RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA841653" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA841653 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7208579 7208579 PRJNA841653_P_NODE_28506_length_305_cov_1.314655_g27832_i0 PRJNA841653 28506 305 1.314655 4.00969775 Peredibacter starrii 28202 Bacteria Bacteria 542 1.38e-149   NTclustered gi|2631252187|gb|CP139487.1| 28202 g27832 i0 99.333 124.977049180328 300 0 98 1 1 298 512156 511857 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 38118 542 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
14858526 14858526 PRJNA841653_P_NODE_39692_length_262_cov_1.201058_g39018_i0 PRJNA841653 39692 262 1.201058 3.14677196 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 167 8.18e-37   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g39018 i0 83.978 104.358778625954 181 22 68 6 86 262 3250367 3250544 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 27342 167 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
19082424 19082424 PRJNA841653_P_NODE_52715_length_246_cov_0.890173_g52041_i0 PRJNA841653 52715 246 0.890173 2.18982558 Pseudobdellovibrio 2862745 Bacteria Bacteria 318 1.98e-82   NTclustered gi|507148233|ref|NR_103040.1| 453816 g52041 i0 90.456 142.727642276423 241 23 98 0 6 246 671 911 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 35111 318 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
24182249 24182249 PRJNA841653_P_NODE_23539_length_336_cov_0.718631_g22865_i0 PRJNA841653 23539 336 0.718631 2.41460016 Pseudobdellovibrio 2862745 Bacteria Bacteria 538 2e-148   NTclustered gi|507148233|ref|NR_103040.1| 453816 g22865 i0 96.353 172.47619047619 329 9 97 3 10 336 829 1156 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 57952 538 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;