RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA839281" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA839281 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18680985 18680985 PRJNA839281_S_NODE_28235_length_166_cov_0.871795_g27966_i0 PRJNA839281 28235 166 0.871795 1.4471797 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 56.5 0.001   NTclustered gi|2621705867|emb|OY763929.1| 2026734 g27966 i0 96.97 2.36144578313253 33 1 20 0 68 100 851680 851712 MAG: Dehalococcoidia bacterium isolate b8c59f79-82fb-4549-ad1a-ab6c7f2c8c82 genome assembly, chromosome: 1 blastn 392 56.5 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;