RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA839281" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA839281 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
829837 829837 PRJNA839281_S_NODE_34001_length_163_cov_0.894737_g33732_i0 PRJNA839281 34001 163 0.894737 1.45842131 Floydiella terrestris 51328 Plants Plants 93.5 8.01e-15   NTclustered gi|304322936|ref|NC_014346.1| 51328 g33732 i0 96.429 1.8159509202454 56 2 34 0 1 56 36698 36753 Floydiella terrestris chloroplast, complete genome blastn 296 93.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetopeltidales Chaetopeltidaceae Floydiella Floydiella terrestris
3380631 3380631 PRJNA839281_S_NODE_33363_length_163_cov_0.894737_g33094_i0 PRJNA839281 33363 163 0.894737 1.45842131 Volvox carteri 3067 Plants Plants 91.6 2.88e-14   NTclustered gi|302835134|ref|XM_002949083.1| 3068 g33094 i0 79.286 0.858895705521472 140 22 83 7 28 163 4570 4434 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_89530), partial mRNA blastn 140 91.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
7207931 7207931 PRJNA839281_S_NODE_26886_length_167_cov_0.864407_g26617_i0 PRJNA839281 26886 167 0.864407 1.44355969 Chlorella variabilis 554065 Plants Plants 56.5 0.001   NTclustered gi|552820939|ref|XM_005845654.1| 554065 g26617 i0 96.97 5.10179640718563 33 1 20 0 114 146 2368 2336 Chlorella variabilis hypothetical protein (CHLNCDRAFT_136874) mRNA, complete cds blastn 852 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
8482726 8482726 PRJNA839281_S_NODE_4727_length_421_cov_2.403226_g4458_i0 PRJNA839281 4727 421 2.403226 10.11758146 Chlorella variabilis 554065 Plants Plants 274 7.95e-69   NTclustered gi|552840730|ref|XM_005850063.1| 554065 g4458 i0 79.25 54.790973871734 400 77 94 5 25 421 61 457 Chlorella variabilis 40S ribosomal protein S18 (CHLNCDRAFT_34417) mRNA, complete cds blastn 23067 274 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
17407840 17407840 PRJNA839281_S_NODE_19114_length_189_cov_1.692857_g18845_i0 PRJNA839281 19114 189 1.692857 3.19949973 Chlamydomonas reinhardtii 3055 Plants Plants 137 4.349999999999999e-28   NTclustered gi|2082258287|ref|XM_043067367.1| 3055 g18845 i0 80.435 0.973544973544973 184 32 96 4 2 183 1333 1152 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_11g467616v5), mRNA blastn 184 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
21231763 21231763 PRJNA839281_S_NODE_24217_length_172_cov_4.016260_g23948_i0 PRJNA839281 24217 172 4.01626 6.9079672 Polytomella parva 51329 Plants Plants 67.6 5.15e-7   NTclustered gi|1861356351|gb|MT377403.1| 51329 g23948 i0 91.667 0.441860465116279 48 4 28 0 121 168 1134 1087 Polytomella parva clone 0016314495 nucleolin rDNA chromatin transcription factor (NUCL) mRNA, complete cds; plastid blastn 76 67.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella parva
25457056 25457056 PRJNA839281_S_NODE_38240_length_160_cov_3.072072_g37971_i0 PRJNA839281 38240 160 3.072072 4.9153152 Eukaryota 2759 Plants Plants 134 4.61e-27   NTclustered gi|926773763|ref|XM_014039902.1| 145388 g37971 i0 85.938 80.6125 128 14 79 4 1 126 408 283 Monoraphidium neglectum 60S ribosomal protein L19-2 mRNA blastn 12898 134 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;