RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA835051" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA835051 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17404991 17404991 PRJNA835051_S_NODE_97774_length_171_cov_1.125000_g97478_i0 PRJNA835051 97774 171 1.125 1.92375 Thiospirochaeta perfilievii 252967 Bacteria Bacteria 54.7 0.004   NTclustered gi|1735508175|gb|CP035807.1| 252967 g97478 i0 100 0.169590643274854 29 0 17 0 141 169 155956 155984 Thiospirochaeta perfilievii strain P chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Thiospirochaeta Thiospirochaeta perfilievii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;