RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA835051" and tax_phylum = "Negarnaviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA835051 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2101059 2101059 PRJNA835051_S_NODE_126862_length_153_cov_0.872727_g126566_i0 PRJNA835051 126862 153 0.872727 1.33527231 Orthohantavirus tulaense 3052503 Viruses Viruses 283 4.0799999999999995e-72   NTclustered gi|2692332039|gb|OP173274.1| 3052503 g126566 i0 100 22.9019607843137 153 0 100 0 1 153 2386 2234 Orthohantavirus tulaense isolate MarDIs07 segment M, complete sequence blastn 3504 283 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Elliovirales Hantaviridae Orthohantavirus Orthohantavirus tulaense
2102267 2102267 PRJNA835051_S_NODE_99322_length_170_cov_1.125984_g99026_i0 PRJNA835051 99322 170 1.125984 1.9141728 Orthohantavirus tulaense 3052503 Viruses Viruses 315 1.64e-81   NTclustered gi|2692332129|gb|OP173319.1| 3052503 g99026 i0 100 61.9705882352941 170 0 100 0 1 170 705 874 Orthohantavirus tulaense isolate MarDIs28 segment S, complete sequence blastn 10535 315 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Elliovirales Hantaviridae Orthohantavirus Orthohantavirus tulaense
4653980 4653980 PRJNA835051_S_NODE_128924_length_152_cov_0.880734_g128628_i0 PRJNA835051 128924 152 0.880734 1.33871568 Orthohantavirus tulaense 3052503 Viruses Viruses 281 1.46e-71   NTclustered gi|2692331951|gb|OP173230.1| 3052503 g128628 i0 100 35.4605263157895 152 0 100 0 1 152 6095 5944 Orthohantavirus tulaense isolate MarDIs07 segment L, complete sequence blastn 5390 281 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Elliovirales Hantaviridae Orthohantavirus Orthohantavirus tulaense
8478492 8478492 PRJNA835051_S_NODE_131467_length_151_cov_0.879630_g131171_i0 PRJNA835051 131467 151 0.87963 1.3282413 Orthohantavirus tulaense 3052503 Viruses Viruses 279 5.19e-71   NTclustered gi|2692331949|gb|OP173229.1| 3052503 g131171 i0 100 40.7350993377483 151 0 100 0 1 151 170 320 Orthohantavirus tulaense isolate MarDIs04 segment L, complete sequence blastn 6151 279 1 Viruses   Orthornavirae Negarnaviricota Bunyaviricetes Elliovirales Hantaviridae Orthohantavirus Orthohantavirus tulaense

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;