RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA835051" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA835051 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9754080 9754080 PRJNA835051_S_NODE_43228_length_226_cov_3.087432_g42932_i0 PRJNA835051 43228 226 3.087432 6.97759632 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 62.1 3.34e-5   NTclustered gi|2621704111|emb|OY761558.1| 2026734 g42932 i0 100 0.146017699115044 33 0 15 0 1 33 1661584 1661616 MAG: Dehalococcoidia bacterium isolate 6ae818db-717c-4d07-8374-be93c3d6d717 genome assembly, chromosome: 1 blastn 33 62.1 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
25052005 25052005 PRJNA835051_S_NODE_22260_length_269_cov_2.871681_g21964_i0 PRJNA835051 22260 269 2.871681 7.72482189 Dehalogenimonas sp. WBC-2 943347 Bacteria Bacteria 52.8 0.025   NTclustered gi|819627869|gb|CP011392.1| 943347 g21964 i0 100 0.104089219330855 28 0 10 0 228 255 920575 920602 Dehalogenimonas sp. WBC-2, complete genome blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalogenimonas Dehalogenimonas sp. WBC-2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;