RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA835051" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA835051 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8478439 8478439 PRJNA835051_S_NODE_125767_length_153_cov_1.736364_g125471_i0 PRJNA835051 125767 153 1.736364 2.65663692 Campylobacter ureolyticus 827 Bacteria Bacteria 267 4.1099999999999994e-67   NTclustered gi|1829985141|gb|CP050963.1| 827 g125471 i0 98.039 3.98039215686275 153 3 100 0 1 153 407950 408102 Campylobacter ureolyticus strain FDAARGOS_673 chromosome blastn 609 267 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter ureolyticus
20355674 20355674 PRJNA835051_S_NODE_110656_length_162_cov_1.605042_g110360_i0 PRJNA835051 110656 162 1.605042 2.60016804 root 1 Root_unresolved Root_unresolved 300 4.36e-77   NTclustered gi|2562786027|gb|CP120256.1| 197 g110360 i0 100 100 162 0 100 0 1 162 1303454 1303293 Campylobacter jejuni strain PS_41_2021 chromosome, complete genome blastn 16200 300 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
21228043 21228043 PRJNA835051_S_NODE_37017_length_236_cov_2.958549_g36721_i0 PRJNA835051 37017 236 2.958549 6.98217564 Poseidonibacter lekithochrous 1904463 Bacteria Bacteria 54.7 0.006   NTclustered gi|1850313845|gb|CP054052.1| 1904463 g36721 i0 96.875 0.135593220338983 32 1 14 0 130 161 3382086 3382055 Poseidonibacter lekithochrous strain DSM 100870 chromosome, complete genome blastn 32 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Poseidonibacter Poseidonibacter lekithochrous

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;