RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA835051" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA835051 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3377133 3377133 PRJNA835051_S_NODE_63923_length_200_cov_1.662420_g63627_i0 PRJNA835051 63923 200 1.66242 3.32484 Bryobacterales bacterium 2026791 Bacteria Bacteria 56.5 0.001   NTclustered gi|2575803349|emb|OY729422.1| 2026791 g63627 i0 100 0.15 30 0 15 0 10 39 3409521 3409492 MAG: Bryobacterales bacterium isolate d47adfd7-a82f-4c56-911c-b237267f53ff genome assembly, chromosome: 1 blastn 30 56.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
5928662 5928662 PRJNA835051_S_NODE_123465_length_154_cov_2.576577_g123169_i0 PRJNA835051 123465 154 2.576577 3.96792858 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 180 5.56e-41   NTclustered gi|2874253889|emb|OY970064.1| 194844 g123169 i0 87.742 6.61688311688312 155 17 100 2 1 154 1411698 1411851 MAG: uncultured Acidobacteriaceae bacterium isolate MFD06092.bin.c.1 genome assembly, chromosome: 1 blastn 1019 180 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
8882486 8882486 PRJNA835051_S_NODE_130147_length_151_cov_1.768519_g129851_i0 PRJNA835051 130147 151 1.768519 2.67046369 Granulicella 940557 Bacteria Bacteria 279 5.19e-71   NTclustered gi|2874253750|emb|OY969625.1| 194844 g129851 i0 100 106.205298013245 151 0 100 0 1 151 1802 1652 MAG: uncultured Acidobacteriaceae bacterium isolate MFD09495.bin.1.66 genome assembly, chromosome: 1 blastn 16037 279 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;