RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA835051" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJNA835051 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3376416 3376416 PRJNA835051_S_NODE_12963_length_306_cov_2.136882_g12667_i0 PRJNA835051 12963 306 2.136882 6.53885892 Stigeoclonium helveticum 55999 Plants Plants 65.8 3.67e-6   NTclustered gi|115349964|ref|NC_008372.1| 55999 g12667 i0 91.667 0.457516339869281 48 2 15 2 239 284 138568 138615 Stigeoclonium helveticum chloroplast, complete genome blastn 140 65.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetophorales Chaetophoraceae Stigeoclonium Stigeoclonium helveticum
4654215 4654215 PRJNA835051_S_NODE_26144_length_259_cov_1.768519_g25848_i0 PRJNA835051 26144 259 1.768519 4.58046421 Trebouxia sp. SL0000003 3350044 Plants Plants 52.8 0.024   NTclustered gi|2917929696|emb|OZ234923.1| 3350044 g25848 i0 100 0.108108108108108 28 0 11 0 18 45 1605063 1605036 Trebouxia sp. SL0000003 genome assembly, chromosome: 18 blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
5928885 5928885 PRJNA835051_S_NODE_2325_length_495_cov_10.586283_g2038_i0 PRJNA835051 2325 495 10.586283 52.40210085 Trebouxia sp. SL0000003 3350044 Plants Plants 58.4 0.001   NTclustered gi|2917929625|emb|OZ234913.1| 3350044 g2038 i0 100 0.125252525252525 31 0 6 0 23 53 2994134 2994164 Trebouxia sp. SL0000003 genome assembly, chromosome: 8 blastn 62 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
9754405 9754405 PRJNA835051_S_NODE_69668_length_194_cov_1.894040_g69372_i0 PRJNA835051 69668 194 1.89404 3.6744376 Prototheca tumulicola 1737639 Plants Plants 52.8 0.017   NTclustered gi|2692959847|ref|NC_086913.1| 1737639 g69372 i0 96.875 0.164948453608247 32 0 16 1 150 181 41821 41851 Prototheca tumulicola strain JCM 31123 plastid, complete genome blastn 32 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca tumulicola
23778474 23778474 PRJNA835051_S_NODE_45559_length_223_cov_1.444444_g45263_i0 PRJNA835051 45559 223 1.444444 3.22111012 Trebouxia sp. SL0000003 3350044 Plants Plants 52.8 0.02   NTclustered gi|2917929628|emb|OZ234916.1| 3350044 g45263 i0 100 0.125560538116592 28 0 13 0 15 42 1156528 1156501 Trebouxia sp. SL0000003 genome assembly, chromosome: 11 blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;