RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA835051" and tax_clade = "ant, tsetse, mealybug, aphid, etc. endosymbionts"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • ant, tsetse, mealybug, aphid, etc. endosymbionts · 2 ✖

bioproject 1

  • PRJNA835051 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2101736 2101736 PRJNA835051_S_NODE_5762_length_374_cov_5.567976_g5466_i0 PRJNA835051 5762 374 5.567976 20.82423024 Candidatus Stammera capleta 2608262 Bacteria Bacteria 52.8 0.036   NTclustered gi|2676815323|gb|CP144799.1| 2608262 g5466 i0 100 0.149732620320856 28 0 7 0 97 124 146794 146767 MAG: Candidatus Stammera capleta isolate KBEPEHBJ chromosome blastn 56 52.8 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta
4654782 4654782 PRJNA835051_S_NODE_67844_length_196_cov_1.738562_g67548_i0 PRJNA835051 67844 196 1.738562 3.40758152 Candidatus Stammera capleta 2608262 Bacteria Bacteria 52.8 0.017   NTclustered gi|1925240937|gb|CP043993.1| 2608262 g67548 i0 96.774 0.158163265306122 31 1 16 0 8 38 56438 56468 MAG: Candidatus Stammera capleta isolate 1 chromosome, complete genome blastn 31 52.8 1 Bacteria ant, tsetse, mealybug, aphid, etc. endosymbionts Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Candidatus Stammera Candidatus Stammera capleta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;