RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA835051" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA835051 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8478923 8478923 PRJNA835051_S_NODE_4127_length_412_cov_2.252033_g3834_i0 PRJNA835051 4127 412 2.252033 9.27837596 Trypanosoma cruzi 5693 Euglenozoa other_Eukaryota 52.8 0.04   NTclustered gi|71655353|ref|XM_811181.1| 5693 g3834 i0 100 0.0679611650485437 28 0 7 0 53 80 692 719 Trypanosoma cruzi uncharacterized protein (Tc00.1047053510861.60), partial mRNA blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
21227411 21227411 PRJNA835051_S_NODE_104677_length_166_cov_1.552846_g104381_i0 PRJNA835051 104677 166 1.552846 2.57772436 Pharyngomonas kirbyi 63601 Heterolobosea other_Eukaryota 62.1 2.31e-5   NTclustered gi|328551513|gb|HQ898858.1| 63601 g104381 i0 97.297 19.2951807228916 37 0 22 1 1 36 455 491 Heterolobosea sp. AGBS-2011 strain SD1A 18S ribosomal RNA gene, partial sequence blastn 3203 62.1 1 Eukaryota Discoba   Heterolobosea       Pharyngomonas Pharyngomonas kirbyi
23778048 23778048 PRJNA835051_S_NODE_14939_length_296_cov_2.284585_g14643_i0 PRJNA835051 14939 296 2.284585 6.7623716 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 54.7 0.008   NTclustered gi|1002446498|ref|XM_015803211.1| 157538 g14643 i0 94.286 0.11824324324324299 35 2 12 0 224 258 926 892 Leptomonas pyrrhocoris hypothetical protein mRNA blastn 35 54.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris
24181139 24181139 PRJNA835051_S_NODE_49179_length_218_cov_1.382857_g48883_i0 PRJNA835051 49179 218 1.382857 3.01462826 root 1 Root_unresolved Root_unresolved 52.8 0.019   NTclustered gi|340053499|emb|HE573021.1| 1055687 g48883 i0 100 0.256880733944954 28 0 13 0 41 68 1057489 1057516 Trypanosoma vivax Y486 annotated genomic contig, chromosome 5 blastn 56 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;