RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA835051" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA835051 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11433393 11433393 PRJNA835051_S_NODE_68709_length_195_cov_1.881579_g68413_i0 PRJNA835051 68709 195 1.881579 3.66907905 Physarum 5790 Evosea other_Eukaryota 265 1.99e-66   NTclustered gi|381139256|emb|HE655073.1| 289948 g68413 i0 91.282 5.8974358974359 195 16 100 1 1 195 1086 1279 Physarum albescens partial 28S rRNA gene, isolate Fr-K2 blastn 1150 265 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum albescens
13580106 13580106 PRJNA835051_S_NODE_80971_length_184_cov_1.241135_g80675_i0 PRJNA835051 80971 184 1.241135 2.2836884 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.7 0.004   NTclustered gi|470410531|ref|XM_004336229.1| 1257118 g80675 i0 96.97 0.358695652173913 33 0 17 1 60 91 480 448 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_105750), partial mRNA blastn 66 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;