RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA833575" and tax_phylum = "Negarnaviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 14 ✖

tax_kingdom 1

bioproject 1

  • PRJNA833575 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1228956 1228956 PRJNA833575_P_NODE_3361_length_753_cov_2.055556_g3246_i0 PRJNA833575 3361 753 2.055556 15.47833668 Alphainfluenzavirus 197911 Viruses Viruses 1339 0   NTclustered gi|1377224815|gb|MH201219.1| 11320 g3246 i0 98.56 101.418326693227 764 0 100 1 1 753 2276 1513 Influenza A virus (A/PR/8_RGCDC-4,6/34(H1N1)) segment 2 polymerase PB1 (PB1) and PB1-F2 protein (PB1-F2) genes, complete cds blastn 76368 1339 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
2504646 2504646 PRJNA833575_P_NODE_5042_length_626_cov_2.001795_g4908_i0 PRJNA833575 5042 626 2.001795 12.5312367 root 1 Root_unresolved Root_unresolved 1149 0   NTclustered gi|1480163907|gb|MH785012.1| 211044 g4908 i0 99.84 98.111821086262 625 1 99 0 2 626 2 626 Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 7 matrix protein 2 (M2) and matrix protein 1 (M1) genes, complete cds blastn 61418 1149 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
5056729 5056729 PRJNA833575_P_NODE_12924_length_404_cov_1.758209_g12787_i0 PRJNA833575 12924 404 1.758209 7.10316436 Alphainfluenzavirus 197911 Viruses Viruses 717 0   NTclustered gi|2922556329|gb|PV225275.1| 11320 g12787 i0 98.759 91.7079207920792 403 5 99 0 2 404 404 2 Influenza A virus (A/Black-faced bunting/Shandong/T167/2022(H1N1)) segment 6 neuraminidase (NA) gene, complete cds blastn 37050 723 0.991701244813278 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
9752290 9752290 PRJNA833575_P_NODE_2588_length_845_cov_3.382732_g2486_i0 PRJNA833575 2588 845 3.382732 28.5840854 Zebrafish influenza B-like virus RQ01 Viruses Viruses 1555 0   NTclustered gi|323362934|gb|CY083002.1| RQ01 g2486 i0 99.882 98.7195266272189 845 1 100 0 1 845 846 2 Influenza A virus (A/swine/KU/8/2001(H1N1)) nuclear export protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds blastn 83418 1555 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Zebrafish influenza B-like virus
10157329 10157329 PRJNA833575_P_NODE_20088_length_329_cov_1.823077_g19951_i0 PRJNA833575 20088 329 1.823077 5.99792333 root 1 Root_unresolved Root_unresolved 608 1.4599999999999995e-169   NTclustered gi|2778013722|gb|PQ074142.1| 11320 g19951 i0 100 100 329 0 100 0 1 329 736 408 Influenza A virus (A/Israel/16/2023(H1N1)) segment 6 neuraminidase (NA) gene, partial cds blastn 32900 608 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
11027967 11027967 PRJNA833575_P_NODE_23709_length_305_cov_1.461864_g23572_i0 PRJNA833575 23709 305 1.461864 4.4586852 Zebrafish influenza B-like virus RQ01 Viruses Viruses 564 2.95e-156   NTclustered gi|1480163920|gb|MH785017.1| RQ01 g23572 i0 100 100 305 0 100 0 1 305 932 1236 Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 2 polymerase PB1 (PB1) and PB1-F2 protein (PB1-F2) genes, complete cds blastn 30500 564 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Zebrafish influenza B-like virus
11028155 11028155 PRJNA833575_P_NODE_34529_length_251_cov_1.500000_g34392_i0 PRJNA833575 34529 251 1.5 3.765 Zebrafish influenza B-like virus RQ01 Viruses Viruses 390 4.239999999999999e-104   NTclustered gi|325026|gb|K00853.1|FLAS10M RQ01 g34392 i0 94.007 100.227091633466 267 0 100 3 1 251 14 280 Influenza A/Puerto Rico/8/34 (H1N1), subgenomic RNA 10 (from seg 1), in defective interfering virus blastn 25157 390 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Zebrafish influenza B-like virus
11432907 11432907 PRJNA833575_P_NODE_549_length_1550_cov_7.201891_g519_i0 PRJNA833575 549 1550 7.201891 111.6293105 Viruses 10239 Viruses Viruses 2830 0   NTclustered gi|1352367018|gb|MH006711.1| 11320 g519 i0 99.741 98.8574193548387 1544 4 99 0 1 1544 1544 1 Influenza A virus (A/swine/Michoacan/MichDMZC10/2015(H1N1)) segment 5 nucleocapsid protein (NP) gene, complete cds blastn 153229 2852 0.992286115007013 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
15256839 15256839 PRJNA833575_P_NODE_20732_length_325_cov_0.746094_g20595_i0 PRJNA833575 20732 325 0.746094 2.4248055 Alphainfluenzavirus 197911 Viruses Viruses 590 5.2299999999999986e-164   NTclustered gi|1352367010|gb|MH006708.1| 11320 g20595 i0 99.385 100 325 2 100 0 1 325 798 474 Influenza A virus (A/swine/Michoacan/MichDMZC10/2015(H1N1)) segment 2 polymerase PB1 (PB1) and PB1-F2 protein (PB1-F2) genes, complete cds blastn 32500 595 0.991596638655462 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
16531809 16531809 PRJNA833575_P_NODE_9653_length_461_cov_2.543367_g9516_i0 PRJNA833575 9653 461 2.543367 11.72492187 Alphainfluenzavirus 197911 Viruses Viruses 830 0   NTclustered gi|1377224815|gb|MH201219.1| 11320 g9516 i0 99.56 98.0281995661605 455 2 99 0 6 460 455 1 Influenza A virus (A/PR/8_RGCDC-4,6/34(H1N1)) segment 2 polymerase PB1 (PB1) and PB1-F2 protein (PB1-F2) genes, complete cds blastn 45191 837 0.991636798088411 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
18675942 18675942 PRJNA833575_P_NODE_555_length_1545_cov_4.345528_g524_i0 PRJNA833575 555 1545 4.345528 67.1384076 Zebrafish influenza B-like virus RQ01 Viruses Viruses 2854 0   NTclustered gi|1480163905|gb|MH785011.1| RQ01 g524 i0 100 97.9870550161812 1545 0 100 0 1 1545 6 1550 Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 4 hemagglutinin (HA) gene, complete cds blastn 151390 2854 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Zebrafish influenza B-like virus
19080554 19080554 PRJNA833575_P_NODE_32455_length_260_cov_2.513089_g32318_i0 PRJNA833575 32455 260 2.513089 6.5340314 Alphainfluenzavirus 197911 Viruses Viruses 481 2.55e-131   NTclustered gi|2046376638|gb|MZ310488.1| 11320 g32318 i0 100 99.4807692307692 260 0 100 0 1 260 271 12 Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 3 polymerase PA (PA) and PA-X protein (PA-X) genes, complete cds blastn 25865 481 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
22906246 22906246 PRJNA833575_P_NODE_11598_length_424_cov_2.098592_g11461_i0 PRJNA833575 11598 424 2.098592 8.89803008 Alphainfluenzavirus 197911 Viruses Viruses 767 0   NTclustered gi|2194323927|gb|OM679435.1| 11320 g11461 i0 99.292 99.9952830188679 424 3 100 0 1 424 1544 1121 Influenza A virus (A/South Korea/MDCK/2021(H1N1)) segment 1 polymerase PB2 (PB2) gene, complete cds blastn 42398 773 0.992238033635188 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
25050739 25050739 PRJNA833575_P_NODE_39840_length_233_cov_1.756098_g39703_i0 PRJNA833575 39840 233 1.756098 4.09170834 Zebrafish influenza B-like virus RQ01 Viruses Viruses 398 2.32e-106   NTclustered gi|55139140|gb|AY768951.1| RQ01 g39703 i0 99.541 93.3690987124464 218 1 94 0 16 233 1 218 Influenza A virus (A/Puerto Rico/8/34/Mount Sinai/Wi(H1N1)) matrix protein 2 mRNA, partial cds blastn 21755 398 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Zebrafish influenza B-like virus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;