RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA833575" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA833575 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
824576 824576 PRJNA833575_P_NODE_44601_length_228_cov_0.905660_g44464_i0 PRJNA833575 44601 228 0.90566 2.0649048 Lachnospiraceae bacterium JLR.KK009 3114295 Bacteria Bacteria 246 8.69e-61   NTclustered gi|2692820420|gb|CP143549.1| 3114295 g44464 i0 86.547 153.171052631579 223 30 98 0 6 228 1520 1742 Lachnospiraceae bacterium JLR.KK009 strain JLR.KK002 chromosome blastn 34923 246 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae   Lachnospiraceae bacterium JLR.KK009
17402661 17402661 PRJNA833575_P_NODE_32774_length_259_cov_1.247368_g32637_i0 PRJNA833575 32774 259 1.247368 3.23068312 Blautia producta 33035 Bacteria Bacteria 52.8 0.024   NTclustered gi|1575847935|gb|CP035945.1| 33035 g32637 i0 100 0.108108108108108 28 0 11 0 81 108 3257834 3257807 Blautia producta strain PMF1 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia producta
22906510 22906510 PRJNA833575_P_NODE_32078_length_262_cov_1.471503_g31941_i0 PRJNA833575 32078 262 1.471503 3.85533786 Staphylococcus 1279 Bacteria Bacteria 479 9.249999999999999e-131   NTclustered gi|2536850969|gb|CP129362.1| 1283 g31941 i0 99.618 52 262 1 100 0 1 262 2374045 2374306 Staphylococcus haemolyticus strain CCSH-121 chromosome, complete genome blastn 13624 479 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus haemolyticus
25050738 25050738 PRJNA833575_P_NODE_39820_length_233_cov_2.792683_g39683_i0 PRJNA833575 39820 233 2.792683 6.50695139 Dolosigranulum pigrum 29394 Bacteria Bacteria 429 8.239999999999998e-116   NTclustered gi|2020690643|gb|CP040409.1| 29394 g39683 i0 100 24.8927038626609 232 0 99 0 1 232 1199757 1199988 Dolosigranulum pigrum strain KPL3274 chromosome, complete genome blastn 5800 429 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Carnobacteriaceae Dolosigranulum Dolosigranulum pigrum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;