RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA833575" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA833575 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3780971 3780971 PRJNA833575_P_NODE_38083_length_235_cov_1.487952_g37946_i0 PRJNA833575 38083 235 1.487952 3.4966872 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.006   NTclustered gi|1620954204|ref|XM_028689163.1| 77519 g37946 i0 100 0.365957446808511 29 0 12 0 81 109 994 1022 Plasmodium gonderi RNA 3'-terminal phosphate cyclase-like protein (PGO_123730), partial mRNA blastn 86 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gonderi
19950920 19950920 PRJNA833575_P_NODE_39876_length_233_cov_1.512195_g39739_i0 PRJNA833575 39876 233 1.512195 3.52341435 Plasmodium knowlesi 5850 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.25e-4   NTclustered gi|1976646504|ref|XM_002260071.2| 5851 g39739 i0 82.609 0.296137339055794 69 10 29 2 92 159 464 397 Plasmodium knowlesi strain H 60S ribosomal protein L23, putative (PKNH_1205400), partial mRNA blastn 69 60.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium knowlesi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;