RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA833575" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA833575 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5927212 5927212 PRJNA833575_P_NODE_14445_length_384_cov_1.549206_g14308_i0 PRJNA833575 14445 384 1.549206 5.94895104 Entosiphon sulcatum 101493 Euglenozoa other_Eukaryota 327 5.44e-85   NTclustered gi|110589650|gb|DQ683347.1| 101493 g14308 i0 82.031 90.6119791666667 384 69 100 0 1 384 1185 802 Entosiphon sulcatum Hsp90 gene, partial cds blastn 34795 327 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sulcatum
12303591 12303591 PRJNA833575_P_NODE_34550_length_251_cov_1.379121_g34413_i0 PRJNA833575 34550 251 1.379121 3.46159371 Trypanosoma rangeli 5698 Euglenozoa other_Eukaryota 54.7 0.006   NTclustered gi|1673156372|ref|XM_029380942.1| 5698 g34413 i0 100 0.115537848605578 29 0 12 0 31 59 1342 1370 Trypanosoma rangeli TIR protein (TraAM80_03993), partial mRNA blastn 29 54.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma rangeli
20355079 20355079 PRJNA833575_P_NODE_14116_length_388_cov_2.304075_g13979_i0 PRJNA833575 14116 388 2.304075 8.939811 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 159 2.1199999999999993e-34   NTclustered gi|398014913|ref|XM_003860599.1| 5661 g13979 i0 86.301 12.9510309278351 146 20 38 0 1 146 420 275 Leishmania donovani 40S ribosomal protein S23, putative (LDBPK_211300), partial mRNA blastn 5025 159 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania donovani

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;