RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA833575" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA833575 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2100140 2100140 PRJNA833575_P_NODE_9362_length_467_cov_2.241206_g9225_i0 PRJNA833575 9362 467 2.241206 10.46643202 Paramoeba perurans 437603 Discosea other_Eukaryota 316 1.46e-81   NTclustered gi|2048770422|gb|MW534135.1| 437603 g9225 i0 79.954 44.3169164882227 434 83 93 4 5 436 741 310 Paramoeba perurans isolate PPER_00019895 multifunctional chaperone mRNA, complete cds blastn 20696 316 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
3375415 3375415 PRJNA833575_P_NODE_46983_length_220_cov_2.423841_g46846_i0 PRJNA833575 46983 220 2.423841 5.3324502 Paramoeba perurans 437603 Discosea other_Eukaryota 252 1.79e-62   NTclustered gi|145386782|gb|EF216907.1| 437603 g46846 i0 87.611 31.9863636363636 226 17 100 10 1 220 1250 1470 Neoparamoeba perurans strain GD-D1/2 28S large subunit ribosomal RNA gene, partial sequence blastn 7037 252 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
4652546 4652546 PRJNA833575_P_NODE_19704_length_332_cov_1.908745_g19567_i0 PRJNA833575 19704 332 1.908745 6.3370334 Paramoeba branchiphila 308475 Discosea other_Eukaryota 241 6.220000000000001e-59   NTclustered gi|226347442|gb|FJ807261.1| 308475 g19567 i0 80.317 42.1746987951807 315 62 95 0 18 332 744 430 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 14002 241 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
5927358 5927358 PRJNA833575_P_NODE_23865_length_304_cov_1.987234_g23728_i0 PRJNA833575 23865 304 1.987234 6.04119136 Dictydiaethalium plumbeum 1334544 Evosea other_Eukaryota 228 4.3899999999999985e-55   NTclustered gi|501417121|gb|JX481326.1| 1334544 g23728 i0 80.464 76.7236842105263 302 55 99 3 1 300 867 568 Dictydiaethalium plumbeum voucher MM 30150 elongation factor 1A (EF1A) gene, partial cds blastn 23324 228 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Liceales Dictydiaethaliaceae Dictydiaethalium Dictydiaethalium plumbeum
12708530 12708530 PRJNA833575_P_NODE_31090_length_266_cov_1.969543_g30953_i0 PRJNA833575 31090 266 1.969543 5.23898438 Evosea 2605435 Evosea other_Eukaryota 171 6.439999999999999e-38   NTclustered gi|2562369735|gb|OQ884663.1| 283670 g30953 i0 78.947 42.0413533834586 247 48 92 4 22 266 458 214 Oligonema persimile voucher LE348757 translation elongation factor 1-alpha (EF1A) gene, partial cds blastn 11183 172 0.994186046511628 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Oligonema Oligonema persimile
12708592 12708592 PRJNA833575_P_NODE_35570_length_247_cov_1.140449_g35433_i0 PRJNA833575 35570 247 1.140449 2.81690903 Dictyostelium 5782 Evosea other_Eukaryota 329 9.21e-86   NTclustered gi|330841829|ref|XM_003292845.1| 5786 g35433 i0 90.726 99.4089068825911 248 21 100 2 1 247 842 596 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_73394), mRNA blastn 24554 329 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;