RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA832865" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA832865 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4650538 4650538 PRJNA832865_S_NODE_108364_length_242_cov_1.366864_g103278_i0 PRJNA832865 108364 242 1.366864 3.30781088 Brachionus angularis 396692 Rotifera other_Eukaryota 108 4.59e-19   NTclustered gi|213959396|gb|FJ426630.1| 396692 g103278 i0 76.991 10.4917355371901 226 29 93 12 18 242 140 343 Brachionus angularis voucher S. H. Cheng 001 16S ribosomal RNA gene, partial sequence; mitochondrial blastn 2539 108 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus angularis
12301563 12301563 PRJNA832865_S_NODE_14670_length_1068_cov_9.867337_g10845_i0 PRJNA832865 14670 1068 9.867337 105.38315916 Brachionus rubens 392764 Rotifera other_Eukaryota 418 9.289999999999999e-112   NTclustered gi|1802791198|gb|MN256531.1| 392764 g10845 i0 81.87 36.4588014981273 524 70 48 21 540 1054 11280 11787 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 38938 418 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
19949551 19949551 PRJNA832865_S_NODE_38736_length_430_cov_1.439776_g33651_i0 PRJNA832865 38736 430 1.439776 6.1910368 Brachionus angularis 396692 Rotifera other_Eukaryota 52.8 0.041   NTclustered gi|2029759104|gb|MW026556.1| 396692 g33651 i0 94.286 0.0813953488372093 35 1 8 1 4 38 4213 4180 Brachionus angularis ATP-binding cassette transporter Abca2 mRNA, complete cds blastn 35 52.8 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus angularis
21225938 21225938 PRJNA832865_S_NODE_89617_length_258_cov_0.902703_g84531_i0 PRJNA832865 89617 258 0.902703 2.32897374 Brachionus rubens 392764 Rotifera other_Eukaryota 97.1 1.07e-15   NTclustered gi|632795126|gb|KJ489417.1| 392764 g84531 i0 82.759 0.449612403100775 116 13 43 5 5 114 10516 10402 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 116 97.1 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
22906196 22906196 PRJNA832865_S_NODE_46798_length_374_cov_5.083056_g41712_i0 PRJNA832865 46798 374 5.083056 19.01062944 Brachionus 10194 Rotifera other_Eukaryota 287 8.960000000000001e-73   NTclustered gi|1802791198|gb|MN256531.1| 392764 g41712 i0 81.402 69.3689839572193 371 51 97 14 1 362 11269 11630 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 25944 287 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;