RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA832865" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA832865 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5926057 5926057 PRJNA832865_S_NODE_31765_length_508_cov_0.885057_g26696_i0 PRJNA832865 31765 508 0.885057 4.49608956 Eudorina sp. NIES-3984 1941220 Plants Plants 52.8 0.05   NTclustered gi|1477083104|gb|MH267732.1| 1941220 g26696 i0 100 0.0551181102362205 28 0 6 0 275 302 68668 68641 Eudorina sp. NIES-3984 plastid, complete genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Eudorina Eudorina sp. NIES-3984
7200863 7200863 PRJNA832865_S_NODE_22506_length_700_cov_4.385965_g17673_i0 PRJNA832865 22506 700 4.385965 30.701755 Chlamydomonas peterfii 28462 Plants Plants 54.7 0.019   NTclustered gi|952953456|gb|KT625006.1| 28462 g17673 i0 100 0.0414285714285714 29 0 4 0 637 665 224 196 Chlamydomonas peterfii clone contig00165 chloroplast, partial genome blastn 29 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas peterfii
18674849 18674849 PRJNA832865_S_NODE_66815_length_302_cov_2.895197_g61729_i0 PRJNA832865 66815 302 2.895197 8.74349494 Ourococcus multisporus 132186 Plants Plants 52.8 0.028   NTclustered gi|674840770|ref|NC_024762.1| 132186 g61729 i0 96.875 0.105960264900662 32 0 11 1 259 290 4585 4615 Ourococcus multisporus strain UTEX 1240 mitochondrion, complete genome blastn 32 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Ourococcus Ourococcus multisporus
21225246 21225246 PRJNA832865_S_NODE_45277_length_383_cov_1.603226_g40191_i0 PRJNA832865 45277 383 1.603226 6.14035558 Hydrodictyon reticulatum 3107 Plants Plants 54.7 0.01   NTclustered gi|1197510262|ref|NC_034655.1| 3107 g40191 i0 90.476 0.109660574412533 42 2 10 1 294 333 11454 11495 Hydrodictyon reticulatum voucher HAM0289 chloroplast, complete genome blastn 42 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Hydrodictyaceae Hydrodictyon Hydrodictyon reticulatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;