RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA832865" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA832865 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
823934 823934 PRJNA832865_S_NODE_91181_length_255_cov_1.692308_g86095_i0 PRJNA832865 91181 255 1.692308 4.3153854 Dictyostelium purpureum 5786 Evosea other_Eukaryota 60.2 1.38e-4   NTclustered gi|330843931|ref|XM_003293847.1| 5786 g86095 i0 97.222 0.141176470588235 36 0 14 1 142 177 1341 1375 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_158818), partial mRNA blastn 36 60.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
2098996 2098996 PRJNA832865_S_NODE_64102_length_309_cov_6.076271_g59016_i0 PRJNA832865 64102 309 6.076271 18.77567739 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 549 8.389999999999996e-152   NTclustered gi|365928255|gb|JN825705.1| 590481 g59016 i0 99.023 74.0744336569579 307 1 99 2 3 309 1019 715 Uncultured Amoebozoa clone Alchichica_AQ2b_5E_39 small subunit ribosomal RNA gene, partial sequence blastn 22889 549 1 Eukaryota Amoebozoa             uncultured Amoebozoa
5927095 5927095 PRJNA832865_S_NODE_95185_length_250_cov_3.118644_g90099_i0 PRJNA832865 95185 250 3.118644 7.79661 Cavenderia fasciculata 261658 Evosea other_Eukaryota 58.4 4.87e-4   NTclustered gi|470236295|ref|XM_004350051.1| 261658 g90099 i0 89.583 0.192 48 1 18 3 97 141 66 20 Cavenderia fasciculata uncharacterized protein (DFA_11158), partial mRNA blastn 48 58.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;