RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA827593" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA827593 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22497721 22497721 PRJNA827593_P_NODE_25378_length_416_cov_1.813411_g25079_i0 PRJNA827593 25378 416 1.813411 7.54378976 Ektaphelenchoides fuchsi 1453830 Nematoda Nematoda 99 5.07e-16   NTclustered gi|588266140|gb|KJ190832.1| 1453830 g25079 i0 88.235 8.08173076923077 85 7 20 3 213 295 349 432 Ektaphelenchoides fuchsi 28S large subunit ribosomal RNA gene, partial sequence blastn 3362 99 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Ektaphelenchoides Ektaphelenchoides fuchsi
25048025 25048025 PRJNA827593_P_NODE_68340_length_239_cov_2.746988_g68041_i0 PRJNA827593 68340 239 2.746988 6.56530132 Diploscapter sp. JU359 479134 Nematoda Nematoda 377 3.12e-100   NTclustered gi|158821895|gb|EU195959.1| 479134 g68041 i0 96.121 75.9748953974895 232 7 97 2 9 239 2295 2065 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 18158 377 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;