RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA827593" and tax_phylum = "Mucoromycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA827593 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2096435 2096435 PRJNA827593_P_NODE_21622_length_455_cov_2.369110_g21324_i0 PRJNA827593 21622 455 2.36911 10.7794505 Rhizopus delemar 936053 Fungi Fungi 547 4.6199999999999984e-151   NTclustered gi|2797482885|ref|XM_067670371.1| 246409 g21324 i0 89.882 13.7648351648352 425 43 93 0 1 425 155 579 Rhizopus delemar RA 99-880 40S ribosomal protein eS7 (RO3G_15787), partial mRNA blastn 6263 547 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus delemar
3372373 3372373 PRJNA827593_P_NODE_56983_length_262_cov_1.629630_g56684_i0 PRJNA827593 56983 262 1.62963 4.2696306 Gilbertella persicaria 101096 Fungi Fungi 372 1.62e-98   NTclustered gi|2323722218|ref|XM_051581225.1| 101096 g56684 i0 95.299 20.6603053435114 234 11 89 0 22 255 163 396 Gilbertella persicaria ribosomal protein S11-domain-containing protein (B0P05DRAFT_569074), partial mRNA blastn 5413 372 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Choanephoraceae Gilbertella Gilbertella persicaria
19948005 19948005 PRJNA827593_P_NODE_51816_length_277_cov_1.338235_g51517_i0 PRJNA827593 51816 277 1.338235 3.70691095 Mucor racemosus 4841 Fungi Fungi 451 2.15e-122   NTclustered gi|225134681|gb|FJ345353.1| 4841 g51517 i0 96.029 98.4404332129964 277 11 100 0 1 277 2291 2567 Mucor racemosus strain ATCC 42647 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 27268 451 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Mucoraceae Mucor Mucor racemosus
24180036 24180036 PRJNA827593_P_NODE_48639_length_287_cov_2.158879_g48340_i0 PRJNA827593 48639 287 2.158879 6.19598273 Rhizopus 4842 Fungi Fungi 514 2.82e-141   NTclustered gi|1336687659|gb|MG865992.1| 4846 g48340 i0 100 92.815331010453 278 0 97 0 10 287 21 298 Rhizopus stolonifer voucher Rhs sequence blastn 26638 514 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;