RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA827593" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA827593 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
820785 820785 PRJNA827593_P_NODE_13261_length_598_cov_1.864762_g12967_i0 PRJNA827593 13261 598 1.864762 11.15127676 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 712 0   NTclustered gi|2874253978|emb|OY970303.1| 412054 g12967 i0 88.411 40.7240802675585 604 53 100 15 1 598 3485476 3486068 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 24353 712 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
821140 821140 PRJNA827593_P_NODE_31501_length_368_cov_1.044068_g31202_i0 PRJNA827593 31501 368 1.044068 3.84217024 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 176 1.99e-39   NTclustered gi|2874253978|emb|OY970303.1| 412054 g31202 i0 80.083 5.48641304347826 241 44 65 4 112 350 2112291 2112053 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 2019 176 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
4649769 4649769 PRJNA827593_P_NODE_48904_length_286_cov_2.610329_g48605_i0 PRJNA827593 48904 286 2.610329 7.46554094 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 237 6.8e-58   NTclustered gi|575456455|gb|CP007128.1| 861299 g48605 i0 83.142 68.5909090909091 261 42 91 2 7 266 4382585 4382326 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 19617 237 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
22497758 22497758 PRJNA827593_P_NODE_27238_length_399_cov_2.414110_g26939_i0 PRJNA827593 27238 399 2.41411 9.6322989 Gaopeijia maritima 3119007 Bacteria Bacteria 497 4.0799999999999996e-136   NTclustered gi|2716997671|gb|CP144380.1| 3119007 g26939 i0 90 154.568922305764 390 32 97 6 12 399 1346937 1346553 Gaopeijia maritima strain DH-78 chromosome, complete genome blastn 61673 497 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Gaopeijiales Gaopeijiaceae Gaopeijia Gaopeijia maritima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;