RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA827593" and tax_phylum = "Candidatus Roizmaniibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Roizmaniibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA827593 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16123677 16123677 PRJNA827593_P_NODE_31633_length_367_cov_1.370748_g31334_i0 PRJNA827593 31633 367 1.370748 5.03064516 Candidatus Roizmanbacteria bacterium 2282149 Bacteria Bacteria 56.5 0.003   NTclustered gi|1950818454|gb|CP066689.1| 2282149 g31334 i0 97.059 0.0926430517711172 34 0 9 1 270 303 109135 109103 MAG: Candidatus Roizmanbacteria bacterium isolate NC_groundwater_538_Ag_S-0.1um_35_236 chromosome blastn 34 56.5 1 Bacteria Bacteria candidate phyla   Candidatus Roizmaniibacteriota         Candidatus Roizmanbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;