RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA827593" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA827593 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11025376 11025376 PRJNA827593_P_NODE_63089_length_248_cov_1.320000_g62790_i0 PRJNA827593 63089 248 1.32 3.2736 Fimbriimonas sp. 1936159 Bacteria Bacteria 165 2.76e-36   NTclustered gi|2778022393|emb|OZ123194.1| 1936159 g62790 i0 78.629 4.49596774193548 248 53 100 0 1 248 1142522 1142275 MAG: Fimbriimonas sp. isolate MsE-30jul19-LR-01 genome assembly, chromosome: 1 blastn 1115 165 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
17399764 17399764 PRJNA827593_P_NODE_50874_length_280_cov_1.487923_g50575_i0 PRJNA827593 50874 280 1.487923 4.1661844 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 518 2.12e-142   NTclustered gi|974983389|emb|LT007430.1| 157466 g50575 i0 100 100.075 280 0 100 0 1 280 49 328 Uncultured Armatimonadetes bacterium partial 16S rRNA gene, OTU00569 blastn 28021 518 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
18672541 18672541 PRJNA827593_P_NODE_39135_length_325_cov_1.222222_g38836_i0 PRJNA827593 39135 325 1.222222 3.9722215 Fimbriimonas ginsengisoli 1005039 Bacteria Bacteria 209 1.7100000000000001e-49   NTclustered gi|663071213|gb|CP007139.1| 661478 g38836 i0 78.704 0.996923076923077 324 61 98 7 4 323 1257625 1257944 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 324 209 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;