RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA827593" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA827593 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14848771 14848771 PRJNA827593_P_NODE_11072_length_662_cov_2.850594_g10781_i0 PRJNA827593 11072 662 2.850594 18.87093228 Coccomyxa subellipsoidea 248742 Plants Plants 134 2.29e-26   NTclustered gi|545360285|ref|XM_005645473.1| 574566 g10781 i0 89.524 0.158610271903323 105 11 16 0 89 193 464 568 Coccomyxa subellipsoidea C-169 acyl-CoA dehydrogenase NM domain-like protein partial mRNA blastn 105 134 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
17399389 17399389 PRJNA827593_P_NODE_30934_length_371_cov_3.308725_g30635_i0 PRJNA827593 30934 371 3.308725 12.27536975 Coccomyxa subellipsoidea 248742 Plants Plants 117 1.2300000000000002e-21   NTclustered gi|545374769|ref|XM_005651574.1| 574566 g30635 i0 89.247 0.250673854447439 93 10 25 0 14 106 579 487 Coccomyxa subellipsoidea C-169 ABC1-domain-containing protein partial mRNA blastn 93 117 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
21222884 21222884 PRJNA827593_P_NODE_17937_length_506_cov_1.942263_g17639_i0 PRJNA827593 17937 506 1.942263 9.82785078 Coccomyxa subellipsoidea 248742 Plants Plants 174 1.0099999999999999e-38   NTclustered gi|545362574|ref|XM_005646448.1| 574566 g17639 i0 93.22 0.233201581027668 118 8 23 0 389 506 3944 4061 Coccomyxa subellipsoidea C-169 P-loop containing nucleoside triphosphate hydrolase protein partial mRNA blastn 118 174 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;