RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA827593" and tax_clade = "Stenosarchaea group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 3 ✖

bioproject 1

  • PRJNA827593 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8474047 8474047 PRJNA827593_P_NODE_36987_length_335_cov_3.675573_g36688_i0 PRJNA827593 36987 335 3.675573 12.31316955 Methanosarcina acetivorans 2214 Archaea Archaea 52.8 0.032   NTclustered gi|19918815|gb|AE010299.1| 188937 g36688 i0 100 0.0835820895522388 28 0 8 0 230 257 2077152 2077179 Methanosarcina acetivorans str. C2A, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina acetivorans
12300181 12300181 PRJNA827593_P_NODE_24950_length_420_cov_1.902017_g24651_i0 PRJNA827593 24950 420 1.902017 7.9884714 Natrarchaeobaculum aegyptiacum 745377 Archaea Archaea 56.5 0.003   NTclustered gi|1196598842|gb|CP019893.1| 745377 g24651 i0 100 0.0714285714285714 30 0 7 0 44 73 2973647 2973618 Natrarchaeobaculum aegyptiacum strain JW/NM-HA 15 chromosome, complete genome blastn 30 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrarchaeobaculum Natrarchaeobaculum aegyptiacum
25047873 25047873 PRJNA827593_P_NODE_58460_length_258_cov_1.659459_g58161_i0 PRJNA827593 58460 258 1.659459 4.28140422 Haloferax mediterranei 2252 Archaea Archaea 52.8 0.023   NTclustered gi|640913992|gb|CP001868.2| 523841 g58161 i0 100 0.325581395348837 28 0 11 0 18 45 2426173 2426146 Haloferax mediterranei ATCC 33500, complete genome blastn 84 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax mediterranei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;