RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA827593" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA827593 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2096751 2096751 PRJNA827593_P_NODE_39762_length_322_cov_1.273092_g39463_i0 PRJNA827593 39762 322 1.273092 4.09935624 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 490 5.4e-134   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g39463 i0 94.099 33.7577639751553 322 19 100 0 1 322 4097 4418 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 10870 490 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
3372327 3372327 PRJNA827593_P_NODE_54443_length_269_cov_1.571429_g54144_i0 PRJNA827593 54443 269 1.571429 4.22714401 Physarum polycephalum 5791 Evosea other_Eukaryota 226 1.37e-54   NTclustered gi|3185|emb|X60211.1| 5791 g54144 i0 83.012 43.6505576208178 259 34 94 10 10 262 316 62 P.polycephalum 26S rRNA blastn 11742 226 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
11025486 11025486 PRJNA827593_P_NODE_68709_length_236_cov_2.723926_g68410_i0 PRJNA827593 68709 236 2.723926 6.42846536 Paravannella minima 1443144 Discosea other_Eukaryota 91.6 4.49e-14   NTclustered gi|1583105587|ref|NC_040955.1| 1443144 g68410 i0 84.158 9 101 8 41 8 34 130 5215 5119 Paravannella minima mitochondrion, complete genome blastn 2124 91.6 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
13574587 13574587 PRJNA827593_P_NODE_29811_length_379_cov_2.035948_g29512_i0 PRJNA827593 29811 379 2.035948 7.71624292 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 472 2.3399999999999997e-128   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g29512 i0 89.785 8.73614775725594 372 32 98 6 1 370 4410 4777 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3311 472 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
14849466 14849466 PRJNA827593_P_NODE_51352_length_278_cov_2.356098_g51053_i0 PRJNA827593 51352 278 2.356098 6.54995244 Heterostelium pallidum 13642 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|160688721|gb|EU275726.1| 13642 g51053 i0 94.595 0.133093525179856 37 1 13 1 240 275 12766 12802 Polysphondylium pallidum strain PN500 mitochondrion, complete genome blastn 37 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium pallidum
17399062 17399062 PRJNA827593_P_NODE_12254_length_625_cov_2.211957_g11962_i0 PRJNA827593 12254 625 2.211957 13.82473125 Fuligo septica 159720 Evosea other_Eukaryota 961 0   NTclustered gi|37515398|emb|AJ584697.1| 159720 g11962 i0 99.248 8.7664 532 4 100 0 94 625 8644 9175 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 5479 961 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
22498462 22498462 PRJNA827593_P_NODE_65778_length_244_cov_1.292398_g65479_i0 PRJNA827593 65778 244 1.292398 3.15345112 Didymium iridis 5793 Evosea other_Eukaryota 420 5.24e-113   NTclustered gi|2687|emb|X60210.1| 5793 g65479 i0 99.145 47.9590163934426 234 1 96 1 11 244 2885 2653 D.iridis LSU rRNA gene blastn 11702 420 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;