RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA826497" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA826497 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13574206 13574206 PRJNA826497_S_NODE_6711_length_210_cov_3.344633_g6671_i0 PRJNA826497 6711 210 3.344633 7.0237293 Globisporangium ultimum 2052682 SAR_Eukaryotes SAR_Eukaryotes 381 2.069999999999999e-101   NTclustered gi|299830435|ref|NC_014280.1| 2052682 g6671 i0 99.522 102.509523809524 209 1 99 0 1 209 9491 9699 Pythium ultimum mitochondrion, complete genome blastn 21527 381 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium ultimum
19079833 19079833 PRJNA826497_S_NODE_14395_length_167_cov_4.582090_g14355_i0 PRJNA826497 14395 167 4.58209 7.6520903 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 303 3.5e-78   NTclustered gi|292680103|dbj|AB468709.1| 82942 g14355 i0 99.401 99.9461077844311 167 1 100 0 1 167 79 245 Pythium nunn gene for large subunit ribosomal RNA, partial sequence, strain: UZ041 blastn 16691 303 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium nunn
20354581 20354581 PRJNA826497_S_NODE_18176_length_155_cov_4.024590_g18136_i0 PRJNA826497 18176 155 4.02459 6.2381145 Globisporangium 1448052 SAR_Eukaryotes SAR_Eukaryotes 281 1.49e-71   NTclustered gi|531037417|gb|AY598709.2| 82942 g18136 i0 99.355 100.548387096774 155 1 100 0 1 155 575 729 Globisporangium nunn strain CBS 808.96 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15585 281 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium nunn

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;