RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA826497" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 3 ✖

bioproject 1

  • PRJNA826497 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3780158 3780158 PRJNA826497_S_NODE_4683_length_231_cov_4.398990_g4643_i0 PRJNA826497 4683 231 4.39899 10.1616669 Tobamovirus 12234 Viruses Viruses 425 1.0599999999999999e-114   NTclustered gi|66863602|dbj|AB113116.1| 12239 g4643 i0 100 93.4502164502164 230 0 99 0 2 231 3559 3788 Pepper mild mottle virus gene for 126k protein, complete cds, strain: Pa18 blastn 21587 425 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
17805778 17805778 PRJNA826497_S_NODE_694_length_368_cov_19627.310448_g654_i0 PRJNA826497 694 368 19627.310448 72228.50244864 Alphainfluenzavirus 197911 Viruses Viruses 320 8.68e-83   NTclustered gi|31505997|gb|AY294658.1| 232197 g654 i0 98.361 49.7472826086956 183 2 49 1 125 306 1378 1560 Influenza A virus (A/Sw/ShanDong/1/2003(H9N2)) hemagglutinin (HA) mRNA, complete cds blastn 18307 320 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Alphainfluenzavirus Alphainfluenzavirus influenzae
21222695 21222695 PRJNA826497_S_NODE_517_length_399_cov_6.193989_g477_i0 PRJNA826497 517 399 6.193989 24.71401611 Malassezia restricta virus MrV40L 2727863 Viruses Viruses 691 0   NTclustered gi|1832308141|gb|MN603497.1| 2727863 g477 i0 97.99 0.99749373433584 398 8 99 0 1 398 2243 2640 Malassezia restricta virus MrV40L, complete genome blastn 398 691 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Totiviridae   Malassezia restricta virus MrV40L

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;