RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA826497" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA826497 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4648987 4648987 PRJNA826497_S_NODE_12724_length_174_cov_3.340426_g12684_i0 PRJNA826497 12724 174 3.340426 5.81234124 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 152 1.4e-32   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g12684 i0 89.831 17.4080459770115 118 12 68 0 57 174 7051489 7051606 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 3029 152 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
12299822 12299822 PRJNA826497_S_NODE_15090_length_165_cov_1.924242_g15050_i0 PRJNA826497 15090 165 1.924242 3.1749993 Humisphaera borealis 2807512 Bacteria Bacteria 71.3 3.81e-8   NTclustered gi|1927742986|gb|CP063458.1| 2807512 g15050 i0 97.561 1.12727272727273 41 1 25 0 3 43 5064068 5064108 Humisphaera borealis strain M1803 chromosome, complete genome blastn 186 71.3 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales Tepidisphaeraceae Humisphaera Humisphaera borealis
24179850 24179850 PRJNA826497_S_NODE_12279_length_176_cov_2.993007_g12239_i0 PRJNA826497 12279 176 2.993007 5.26769232 Planctomycetota 203682 Bacteria Bacteria 89.8 1.13e-13   NTclustered gi|12583969|gb|AF245373.1|AF245373 79870 g12239 i0 82.692 33.3920454545455 104 15 59 2 4 106 1658 1557 Planctomycete str. 449 23S ribosomal RNA gene, partial sequence blastn 5877 89.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   planctomycete str. 449
25046946 25046946 PRJNA826497_S_NODE_17060_length_158_cov_10.176000_g17020_i0 PRJNA826497 17060 158 10.176 16.07808 Roseimicrobium sp. ORNL1 2711231 Bacteria Bacteria 63.9 6.03e-6   NTclustered gi|1815841271|gb|CP049143.1| 2711231 g17020 i0 95.122 0.259493670886076 41 1 26 1 106 146 910986 910947 Roseimicrobium sp. ORNL1 chromosome, complete genome blastn 41 63.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Roseimicrobium Roseimicrobium sp. ORNL1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;