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contig_metadata

39 rows where analysis = "blastn", bioproject = "PRJNA825466" and tax_phylum = "Pisuviricota"

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tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 39 ✖

tax_kingdom 1

bioproject 1

  • PRJNA825466 · 39 ✖

analysis 1

  • blastn · 39 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4648804 4648804 PRJNA825466_P_NODE_1924_length_507_cov_2.218894_g1824_i0 PRJNA825466 1924 507 2.218894 11.24979258 Betacoronavirus pandemicum 3418604 Viruses Viruses 937 0   NTclustered gi|2438993056|gb|OQ369223.1| 2697049 g1824 i0 100 100 507 0 100 0 1 507 14172 13666 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/TX-CDC-QDX45690442/2023, complete genome blastn 50700 937 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
4648848 4648848 PRJNA825466_P_NODE_29864_length_217_cov_6.555556_g29763_i0 PRJNA825466 29864 217 6.555556 14.22555652 Betacoronavirus pandemicum 3418604 Viruses Viruses 401 1.6499999999999994e-107   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g29763 i0 100 100 217 0 100 0 1 217 21221 21005 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 21700 401 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
5923639 5923639 PRJNA825466_P_NODE_13685_length_265_cov_1.942708_g13584_i0 PRJNA825466 13685 265 1.942708 5.1481762 Betacoronavirus pandemicum 3418604 Viruses Viruses 490 4.3299999999999986e-134   NTclustered gi|1920148641|gb|MW184352.1| 2697049 g13584 i0 100 100 265 0 100 0 1 265 7350 7086 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/AUS/VIC15830/2020, complete genome blastn 26500 490 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
5923659 5923659 PRJNA825466_P_NODE_1965_length_502_cov_1.708625_g1865_i0 PRJNA825466 1965 502 1.708625 8.5772975 Betacoronavirus pandemicum 3418604 Viruses Viruses 922 0   NTclustered gi|2116533731|emb|OU829539.1| 2697049 g1865 i0 99.801 100 502 1 100 0 1 502 11133 10632 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 50200 922 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
5923687 5923687 PRJNA825466_P_NODE_28025_length_241_cov_4.208333_g27924_i0 PRJNA825466 28025 241 4.208333 10.14208253 Betacoronavirus pandemicum 3418604 Viruses Viruses 446 8.519999999999999e-121   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g27924 i0 100 100 241 0 100 0 1 241 24589 24829 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 24100 446 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
7198608 7198608 PRJNA825466_P_NODE_406_length_1022_cov_2.084299_g335_i0 PRJNA825466 406 1022 2.084299 21.30153578 Betacoronavirus pandemicum 3418604 Viruses Viruses 1888 0   NTclustered gi|1854182511|gb|MT605815.1| 2697049 g335 i0 100 100 1022 0 100 0 1 1022 2286 3307 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WA-S112/2020, complete genome blastn 102200 1888 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
8473361 8473361 PRJNA825466_P_NODE_3367_length_406_cov_2.063063_g3266_i0 PRJNA825466 3367 406 2.063063 8.37603578 Betacoronavirus pandemicum 3418604 Viruses Viruses 750 0   NTclustered gi|2027824975|gb|MW967642.1| 2697049 g3266 i0 100 100 406 0 100 0 1 406 1297 1702 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/NJ-CDC-ASC210012274/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds blastn 40600 750 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
8473363 8473363 PRJNA825466_P_NODE_3587_length_396_cov_3.260062_g3486_i0 PRJNA825466 3587 396 3.260062 12.90984552 Betacoronavirus pandemicum 3418604 Viruses Viruses 732 0   NTclustered gi|2193475630|gb|OM664681.1| 2697049 g3486 i0 100 99.9949494949495 396 0 100 0 1 396 29841 29446 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/PA-CDC-STM-E5GUWP394/2022, complete genome blastn 39598 732 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
8473378 8473378 PRJNA825466_P_NODE_767_length_762_cov_2.728592_g682_i0 PRJNA825466 767 762 2.728592 20.79187104 Betacoronavirus pandemicum 3418604 Viruses Viruses 1391 0   NTclustered gi|2635535590|emb|OY977775.1| 2697049 g682 i0 99.607 100.517060367454 763 2 100 1 1 762 14348 15110 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 76594 1391 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
9748434 9748434 PRJNA825466_P_NODE_1848_length_515_cov_2.199095_g1748_i0 PRJNA825466 1848 515 2.199095 11.32533925 Betacoronavirus pandemicum 3418604 Viruses Viruses 948 0   NTclustered gi|1934877293|gb|MW276335.1| 2697049 g1748 i0 99.806 100 515 1 100 0 1 515 11191 11705 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-CZB-10798/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds blastn 51500 948 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
9748443 9748443 PRJNA825466_P_NODE_21368_length_247_cov_0.885057_g21267_i0 PRJNA825466 21368 247 0.885057 2.18609079 Betacoronavirus pandemicum 3418604 Viruses Viruses 457 4.05e-124   NTclustered gi|2182078985|gb|OM344698.1| 2697049 g21267 i0 100 100 247 0 100 0 1 247 27024 26778 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/TX-CDC-LC0474858/2022, complete genome blastn 24700 457 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
9748493 9748493 PRJNA825466_P_NODE_5368_length_345_cov_2.915441_g5267_i0 PRJNA825466 5368 345 2.915441 10.05827145 Betacoronavirus pandemicum 3418604 Viruses Viruses 638 1.97e-178   NTclustered gi|2028980905|gb|MZ002360.1| 2697049 g5267 i0 100 100 345 0 100 0 1 345 9780 10124 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome blastn 34500 638 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
11024140 11024140 PRJNA825466_P_NODE_2149_length_482_cov_2.567237_g2049_i0 PRJNA825466 2149 482 2.567237 12.37408234 Betacoronavirus pandemicum 3418604 Viruses Viruses 891 0   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g2049 i0 100 100 482 0 100 0 1 482 25588 26069 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 48200 891 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
11024189 11024189 PRJNA825466_P_NODE_849_length_733_cov_3.845455_g761_i0 PRJNA825466 849 733 3.845455 28.18718515 Betacoronavirus pandemicum 3418604 Viruses Viruses 1354 0   NTclustered gi|2028980905|gb|MZ002360.1| 2697049 g761 i0 100 100 733 0 100 0 1 733 16435 15703 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome blastn 73300 1354 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
12299679 12299679 PRJNA825466_P_NODE_8270_length_304_cov_4.138528_g8169_i0 PRJNA825466 8270 304 4.138528 12.58112512 Betacoronavirus pandemicum 3418604 Viruses Viruses 562 1.06e-155   NTclustered gi|2028980905|gb|MZ002360.1| 2697049 g8169 i0 100 100 304 0 100 0 1 304 26513 26816 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome blastn 30400 562 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
13573994 13573994 PRJNA825466_P_NODE_231_length_1315_cov_3.048309_g186_i0 PRJNA825466 231 1315 3.048309 40.08526335 Betacoronavirus pandemicum 3418604 Viruses Viruses 2423 0   NTclustered gi|1826681570|gb|MT259226.1| 2697049 g186 i0 99.924 100 1315 1 100 0 1 1315 1320 6 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/CHN/Wuhan_OS52/2020, complete genome blastn 131500 2423 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
14848522 14848522 PRJNA825466_P_NODE_372_length_1069_cov_1.427711_g304_i0 PRJNA825466 372 1069 1.427711 15.26223059 Betacoronavirus pandemicum 3418604 Viruses Viruses 1969 0   NTclustered gi|2113021200|gb|OK499160.1| 2697049 g304 i0 99.906 100 1069 1 100 0 1 1069 19678 20746 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/FL-CDC-ASC210408444/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes, complete cds blastn 106900 1969 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
14848536 14848536 PRJNA825466_P_NODE_772_length_760_cov_2.660844_g687_i0 PRJNA825466 772 760 2.660844 20.2224144 Betacoronavirus pandemicum 3418604 Viruses Viruses 1404 0   NTclustered gi|2160511214|gb|OL739269.1| 2697049 g687 i0 100 100 760 0 100 0 1 760 25545 24786 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/TWN/KMUH-2/2020, complete genome blastn 76000 1404 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
14848538 14848538 PRJNA825466_P_NODE_7812_length_309_cov_3.038136_g7711_i0 PRJNA825466 7812 309 3.038136 9.38784024 Betacoronavirus pandemicum 3418604 Viruses Viruses 571 1.7899999999999995e-158   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g7711 i0 100 100 309 0 100 0 1 309 26064 26372 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 30900 571 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
16122990 16122990 PRJNA825466_P_NODE_1153_length_641_cov_2.330986_g1057_i0 PRJNA825466 1153 641 2.330986 14.94162026 Betacoronavirus pandemicum 3418604 Viruses Viruses 1181 0   NTclustered gi|2504372624|gb|OQ974494.1| 2697049 g1057 i0 100 99.6911076443058 639 0 99 0 3 641 4225 4863 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/B09229/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds blastn 63902 1181 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
16123072 16123072 PRJNA825466_P_NODE_93_length_1909_cov_2.651416_g72_i0 PRJNA825466 93 1909 2.651416 50.61553144 Betacoronavirus pandemicum 3418604 Viruses Viruses 3504 0   NTclustered gi|2054232605|emb|OU182279.1| 2697049 g72 i0 99.79 100 1909 4 100 0 1 1909 27113 29021 Severe acute respiratory syndrome coronavirus 2 isolate hCoV-19/Iceland/1507/2020 genome assembly, chromosome: hCoV-19_Iceland_1507_2020 blastn 190900 3504 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
17398821 17398821 PRJNA825466_P_NODE_654_length_827_cov_2.208223_g573_i0 PRJNA825466 654 827 2.208223 18.26200421 Betacoronavirus pandemicum 3418604 Viruses Viruses 1517 0   NTclustered gi|2453877168|emb|OX443998.1| 2697049 g573 i0 99.758 103.785973397823 827 2 100 0 1 827 22329 21503 Severe acute respiratory syndrome coronavirus 2 isolate 18208598 genome assembly, complete genome: monopartite blastn 85831 1517 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
18671720 18671720 PRJNA825466_P_NODE_1155_length_641_cov_2.007042_g1059_i0 PRJNA825466 1155 641 2.007042 12.86513922 Betacoronavirus pandemicum 3418604 Viruses Viruses 1157 0   NTclustered gi|2241599185|emb|OW826095.1| 2697049 g1059 i0 99.22 100 641 5 100 0 1 641 7001 6361 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 64100 1157 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
18671750 18671750 PRJNA825466_P_NODE_1795_length_523_cov_2.833333_g1696_i0 PRJNA825466 1795 523 2.833333 14.81833159 Betacoronavirus pandemicum 3418604 Viruses Viruses 966 0   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g1696 i0 100 100 523 0 100 0 1 523 5418 4896 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 52300 966 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
18671785 18671785 PRJNA825466_P_NODE_455_length_970_cov_2.659978_g380_i0 PRJNA825466 455 970 2.659978 25.8017866 Betacoronavirus pandemicum 3418604 Viruses Viruses 1792 0   NTclustered gi|2523306575|emb|OX913992.1| 2697049 g380 i0 100 100 970 0 100 0 1 970 23809 22840 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 97000 1792 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
19946951 19946951 PRJNA825466_P_NODE_14036_length_263_cov_4.531579_g13935_i0 PRJNA825466 14036 263 4.531579 11.91805277 Betacoronavirus pandemicum 3418604 Viruses Viruses 486 5.5499999999999986e-133   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g13935 i0 100 100 263 0 100 0 1 263 6100 6362 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 26300 486 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
19946961 19946961 PRJNA825466_P_NODE_1616_length_546_cov_3.059197_g1518_i0 PRJNA825466 1616 546 3.059197 16.70321562 Betacoronavirus pandemicum 3418604 Viruses Viruses 1009 0   NTclustered gi|2028980905|gb|MZ002360.1| 2697049 g1518 i0 100 100 546 0 100 0 1 546 15166 15711 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome blastn 54600 1009 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
21222457 21222457 PRJNA825466_P_NODE_15897_length_253_cov_1.122222_g15796_i0 PRJNA825466 15897 253 1.122222 2.83922166 Betacoronavirus pandemicum 3418604 Viruses Viruses 468 1.92e-127   NTclustered gi|2103422285|emb|OU727096.1| 2697049 g15796 i0 100 100 253 0 100 0 1 253 29213 28961 Severe acute respiratory syndrome coronavirus 2 isolate hCoV-19/Switzerland/JU-UHB-43039536/2021 genome assembly, chromosome: 1 blastn 25300 468 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
21222517 21222517 PRJNA825466_P_NODE_897_length_714_cov_2.324493_g807_i0 PRJNA825466 897 714 2.324493 16.59688002 Betacoronavirus pandemicum 3418604 Viruses Viruses 1319 0   NTclustered gi|2028980905|gb|MZ002360.1| 2697049 g807 i0 100 100 714 0 100 0 1 714 12962 13675 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome blastn 71400 1319 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
22497149 22497149 PRJNA825466_P_NODE_14798_length_259_cov_1.301075_g14697_i0 PRJNA825466 14798 259 1.301075 3.36978425 Betacoronavirus pandemicum 3418604 Viruses Viruses 473 4.25e-129   NTclustered gi|2028980905|gb|MZ002360.1| 2697049 g14697 i0 99.614 100 259 1 100 0 1 259 22550 22292 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome blastn 25900 473 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
22497150 22497150 PRJNA825466_P_NODE_14838_length_259_cov_1.236559_g14737_i0 PRJNA825466 14838 259 1.236559 3.20268781 Betacoronavirus pandemicum 3418604 Viruses Viruses 479 9.13e-131   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g14737 i0 100 100 259 0 100 0 1 259 7778 7520 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 25900 479 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
22497152 22497152 PRJNA825466_P_NODE_1718_length_532_cov_2.583878_g1619_i0 PRJNA825466 1718 532 2.583878 13.74623096 Betacoronavirus pandemicum 3418604 Viruses Viruses 983 0   NTclustered gi|2499447400|emb|OX492971.1| 2697049 g1619 i0 100 100 532 0 100 0 1 532 10702 10171 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 53200 983 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
23772842 23772842 PRJNA825466_P_NODE_179_length_1487_cov_3.049505_g141_i0 PRJNA825466 179 1487 3.049505 45.34613935 Betacoronavirus pandemicum 3418604 Viruses Viruses 2747 0   NTclustered gi|2057772748|emb|OU240649.1| 2697049 g141 i0 100 100 1487 0 100 0 1 1487 9666 8180 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 148700 2747 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
23772873 23772873 PRJNA825466_P_NODE_319_length_1138_cov_2.790610_g255_i0 PRJNA825466 319 1138 2.79061 31.7571418 Betacoronavirus pandemicum 3418604 Viruses Viruses 2097 0   NTclustered gi|2190424604|gb|OM565997.1| 2697049 g255 i0 99.912 100 1138 1 100 0 1 1138 16560 17697 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/CA-CDC-ASC210538513/2022 ORF1ab polyprotein (ORF1ab) and ORF1a polyprotein (ORF1ab) genes, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds blastn 113800 2097 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
25046709 25046709 PRJNA825466_P_NODE_13640_length_266_cov_0.917098_g13539_i0 PRJNA825466 13640 266 0.917098 2.43948068 Betacoronavirus pandemicum 3418604 Viruses Viruses 464 2.64e-126   NTclustered gi|2892074031|gb|PQ981157.1| 2697049 g13539 i0 98.12 100 266 5 100 0 1 266 26315 26580 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/FRA/21082240639/2021 ORF1ab polyprotein (ORF1ab) and ORF1a polyprotein (ORF1ab) genes, partial cds; and surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes, complete cds blastn 26600 464 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
25046727 25046727 PRJNA825466_P_NODE_1740_length_529_cov_1.675439_g1641_i0 PRJNA825466 1740 529 1.675439 8.86307231 Betacoronavirus pandemicum 3418604 Viruses Viruses 977 0   NTclustered gi|2028980905|gb|MZ002360.1| 2697049 g1641 i0 100 100 529 0 100 0 1 529 24392 23864 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/WI-CDC-LC0038184/2021, complete genome blastn 52900 977 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
25046749 25046749 PRJNA825466_P_NODE_240_length_1287_cov_2.767710_g192_i0 PRJNA825466 240 1287 2.76771 35.6204277 Betacoronavirus pandemicum 3418604 Viruses Viruses 2377 0   NTclustered gi|2200613490|gb|OM853158.1| 2697049 g192 i0 100 100 1287 0 100 0 1 1287 19514 18228 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/TN-CDC-ASC210555134/2022, complete genome blastn 128700 2377 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
25046776 25046776 PRJNA825466_P_NODE_380_length_1063_cov_2.271717_g311_i0 PRJNA825466 380 1063 2.271717 24.14835171 Betacoronavirus pandemicum 3418604 Viruses Viruses 1964 0   NTclustered gi|2089843528|emb|OU594278.1| 2697049 g311 i0 100 100 1063 0 100 0 1 1063 11751 12813 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 106300 1964 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
25046808 25046808 PRJNA825466_P_NODE_9980_length_288_cov_2.469767_g9879_i0 PRJNA825466 9980 288 2.469767 7.11292896 Betacoronavirus pandemicum 3418604 Viruses Viruses 532 7.8e-147   NTclustered gi|2099506492|gb|OK254697.1| 2697049 g9879 i0 100 100 288 0 100 0 1 288 5664 5951 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/human/USA/UT-UPHL-210921774045/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes, complete cds blastn 28800 532 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;