RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA825466" and tax_kingdom = "Thermotogati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 7 ✖

bioproject 1

  • PRJNA825466 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1228113 1228113 PRJNA825466_P_NODE_8341_length_303_cov_11.934783_g8240_i0 PRJNA825466 8341 303 11.934783 36.16239249 Deinococcus 1298 Bacteria Bacteria 355 1.92e-93   NTclustered gi|470483488|ref|NR_076595.1| 310783 g8240 i0 87.789 247.551155115512 303 37 100 0 1 303 200 502 Deinococcus deserti strain VCD115 23S ribosomal RNA gene, complete sequence blastn 75008 355 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus deserti
7606193 7606193 PRJNA825466_P_NODE_7706_length_310_cov_2.978903_g7605_i0 PRJNA825466 7706 310 2.978903 9.2345993 Thermus 270 Bacteria Bacteria 272 2.04e-68   NTclustered gi|320149275|gb|CP001962.1| 743525 g7605 i0 100 26.4161290322581 147 0 95 0 164 310 11316 11170 Thermus scotoductus SA-01, complete genome blastn 8189 272 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus
8881213 8881213 PRJNA825466_P_NODE_29347_length_239_cov_3.090361_g29246_i0 PRJNA825466 29347 239 3.090361 7.38596279 Thermus 270 Bacteria Bacteria 436 5.0799999999999985e-118   NTclustered gi|320149275|gb|CP001962.1| 743525 g29246 i0 99.582 37.6610878661088 239 1 100 0 1 239 1824143 1823905 Thermus scotoductus SA-01, complete genome blastn 9001 436 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus
14848483 14848483 PRJNA825466_P_NODE_19592_length_248_cov_2.560000_g19491_i0 PRJNA825466 19592 248 2.56 6.3488 Thermus sp. NEB1569 2918899 Bacteria Bacteria 453 5.2600000000000005e-123   NTclustered gi|2199052145|gb|CP092445.1| 2918899 g19491 i0 99.597 27.1129032258065 248 1 100 0 1 248 1384160 1384407 Thermus sp. NEB1569 chromosome, complete genome blastn 6724 453 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp. NEB1569
15256164 15256164 PRJNA825466_P_NODE_21692_length_247_cov_0.885057_g21591_i0 PRJNA825466 21692 247 0.885057 2.18609079 Thermus 270 Bacteria Bacteria 429 8.83e-116   NTclustered gi|2049910225|gb|CP076325.1| 88190 g21591 i0 97.976 48.7004048582996 247 5 100 0 1 247 474984 475230 MAG: Thermus antranikianii isolate RBS10-92 chromosome, complete genome blastn 12029 429 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus antranikianii
21222483 21222483 PRJNA825466_P_NODE_24917_length_244_cov_0.900585_g24816_i0 PRJNA825466 24917 244 0.900585 2.1974274 Thermus sp. NEB1569 2918899 Bacteria Bacteria 379 8.889999999999998e-101   NTclustered gi|2199052145|gb|CP092445.1| 2918899 g24816 i0 94.672 26.3237704918033 244 13 100 0 1 244 320993 321236 Thermus sp. NEB1569 chromosome, complete genome blastn 6423 379 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp. NEB1569
22905687 22905687 PRJNA825466_P_NODE_29638_length_231_cov_2.227848_g29537_i0 PRJNA825466 29638 231 2.227848 5.14632888 Thermus 270 Bacteria Bacteria 339 1.41e-88   NTclustered gi|939575972|gb|CP010822.1| 498848 g29537 i0 93.074 56.8311688311688 231 16 100 0 1 231 1749006 1748776 Thermus aquaticus Y51MC23, complete genome blastn 13128 339 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;