RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA825466" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA825466 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
820446 820446 PRJNA825466_P_NODE_26861_length_242_cov_1.727811_g26760_i0 PRJNA825466 26861 242 1.727811 4.18130262 cyanobacterium NIES-36 2510787 Bacteria Bacteria 390 4.0699999999999996e-104   NTclustered gi|1566846291|dbj|LC455671.1| 2510787 g26760 i0 96.234 198.214876033058 239 8 99 1 3 241 612 375 Cyanobacterium NIES-36 gene for 23S ribosomal RNA, partial sequence blastn 47968 390 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota         cyanobacterium NIES-36
12299681 12299681 PRJNA825466_P_NODE_8510_length_302_cov_1.008734_g8409_i0 PRJNA825466 8510 302 1.008734 3.04637668 Anabaena sp. YBS01 2490939 Bacteria Bacteria 401 2.4199999999999994e-107   NTclustered gi|1772285456|gb|CP034058.1| 2490939 g8409 i0 92.606 81.3278145695364 284 14 93 6 23 302 5578077 5577797 Anabaena sp. YBS01 chromosome, complete genome blastn 24561 401 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Anabaena Anabaena sp. YBS01
22497158 22497158 PRJNA825466_P_NODE_18478_length_249_cov_1.931818_g18377_i0 PRJNA825466 18478 249 1.931818 4.81022682 Chroococcidiopsis sp. CCMEE 29 155894 Bacteria Bacteria 178 3.56e-40   NTclustered gi|2245450207|gb|CP083761.1| 155894 g18377 i0 79.6 1.72289156626506 250 49 100 2 1 249 1016148 1016396 Chroococcidiopsis sp. CCMEE 29 chromosome blastn 429 178 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis Chroococcidiopsis sp. CCMEE 29

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;