RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA825466" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA825466 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18671774 18671774 PRJNA825466_P_NODE_27115_length_242_cov_0.911243_g27014_i0 PRJNA825466 27115 242 0.911243 2.20520806 Pyxidicula operculata 1078852 Tubulinea other_Eukaryota 387 5.26e-103   NTclustered gi|345452598|gb|JF694317.1| 1078852 g27014 i0 95.455 98.8884297520661 242 11 100 0 1 242 389 148 Pyxidicula operculata clone 2 actin gene, partial cds blastn 23931 387 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida   Pyxidicula Pyxidicula operculata
22905657 22905657 PRJNA825466_P_NODE_14718_length_259_cov_2.220430_g14617_i0 PRJNA825466 14718 259 2.22043 5.7509137 Ripella 1217112 Discosea other_Eukaryota 409 1.22e-109   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g14617 i0 100 85.8687258687259 221 0 85 0 39 259 228 448 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 22240 411 0.995133819951338 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
23772869 23772869 PRJNA825466_P_NODE_29539_length_234_cov_2.254658_g29438_i0 PRJNA825466 29539 234 2.254658 5.27589972 Cochliopodium minus 313997 Discosea other_Eukaryota 292 1.13e-74   NTclustered gi|330902893|gb|JF298271.1| 313997 g29438 i0 90.179 94.3547008547009 224 22 96 0 4 227 878 1101 Cochliopodium minus clone 5202 actin gene, partial cds blastn 22079 292 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
25046755 25046755 PRJNA825466_P_NODE_2560_length_449_cov_2.694149_g2459_i0 PRJNA825466 2560 449 2.694149 12.09672901 Dictyostelium discoideum 44689 Evosea other_Eukaryota 516 1.28e-141   NTclustered gi|66821326|ref|XM_639065.1| 352472 g2459 i0 87.472 98.271714922049 447 56 99 0 1 447 561 1007 Dictyostelium discoideum AX4 hypothetical protein (act13) mRNA, complete cds blastn 44124 516 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;