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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA816527" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA816527 · 13 ✖

analysis 1

  • blastn · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
819467 819467 PRJNA816527_P_NODE_19081_length_245_cov_0.895349_g19031_i0 PRJNA816527 19081 245 0.895349 2.19360505 Gallus gallus 9031 Chordata Chordata 431 2.4299999999999996e-116   NTclustered gi|2099395462|ref|NM_001004393.2| 9031 g19031 i0 98.367 40.6367346938775 245 4 100 0 1 245 2578 2822 Gallus gallus stathmin 3 (STMN3), mRNA blastn 9956 431 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
819508 819508 PRJNA816527_P_NODE_20501_length_241_cov_0.916667_g20451_i0 PRJNA816527 20501 241 0.916667 2.20916747 Sus scrofa 9823 Chordata Chordata 440 3.959999999999999e-119   NTclustered gi|371913089|dbj|AK392746.1| 9823 g20451 i0 99.585 95.4190871369295 241 1 100 0 1 241 252 12 Sus scrofa mRNA, clone: HTMT10097H06, expressed in hypothalamus blastn 22996 440 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
3370294 3370294 PRJNA816527_P_NODE_18543_length_247_cov_0.885057_g18493_i0 PRJNA816527 18543 247 0.885057 2.18609079 Mus musculus 10090 Chordata Chordata 457 4.05e-124   NTclustered gi|53378864|gb|AC134601.4| 10090 g18493 i0 100 68.6761133603239 247 0 100 0 1 247 102704 102458 Mus musculus BAC clone RP23-242M10 from 12, complete sequence blastn 16963 457 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
3370360 3370360 PRJNA816527_P_NODE_20663_length_241_cov_0.916667_g20613_i0 PRJNA816527 20663 241 0.916667 2.20916747 Sus scrofa 9823 Chordata Chordata 429 8.58e-116   NTclustered gi|1191816966|ref|XM_021065444.1| 9823 g20613 i0 98.755 3 241 3 100 0 1 241 627 387 PREDICTED: Sus scrofa spindle and kinetochore associated complex subunit 3 (SKA3), transcript variant X1, mRNA blastn 723 429 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
4647678 4647678 PRJNA816527_P_NODE_13264_length_288_cov_1.423256_g13214_i0 PRJNA816527 13264 288 1.423256 4.09897728 Mus musculus 10090 Chordata Chordata 532 7.8e-147   NTclustered gi|74146689|dbj|AK169739.1| 10090 g13214 i0 100 4.6875 288 0 100 0 1 288 3049 2762 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430016D15 product:hypothetical protein, full insert sequence blastn 1350 532 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
4647715 4647715 PRJNA816527_P_NODE_14724_length_273_cov_1.525000_g14674_i0 PRJNA816527 14724 273 1.525 4.16325 Mus musculus 10090 Chordata Chordata 505 1.6e-138   NTclustered gi|66268044|gb|AC149085.6| 10090 g14674 i0 100 23.0769230769231 273 0 100 0 1 273 172185 171913 Mus musculus BAC clone RP23-191I16 from chromosome 7, complete sequence blastn 6300 505 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
8472393 8472393 PRJNA816527_P_NODE_18907_length_246_cov_0.890173_g18857_i0 PRJNA816527 18907 246 0.890173 2.18982558 Dama dama 30532 Chordata Chordata 364 2.509999999999999e-96   NTclustered gi|2625313545|ref|XM_061119993.1| 30532 g18857 i0 93.469 585.467479674797 245 16 99 0 1 245 1801 2045 PREDICTED: Dama dama uncharacterized LOC133040257 (LOC133040257), mRNA blastn 144025 364 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Dama Dama dama
9747476 9747476 PRJNA816527_P_NODE_17508_length_249_cov_0.875000_g17458_i0 PRJNA816527 17508 249 0.875 2.17875 Sus scrofa 9823 Chordata Chordata 460 3.16e-125   NTclustered gi|1191809130|ref|XM_001926818.5| 9823 g17458 i0 100 104.240963855422 249 0 100 0 1 249 2986 2738 PREDICTED: Sus scrofa L-2-hydroxyglutarate dehydrogenase (L2HGDH), transcript variant X1, mRNA blastn 25956 460 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
12298474 12298474 PRJNA816527_P_NODE_12330_length_299_cov_3.088496_g12280_i0 PRJNA816527 12330 299 3.088496 9.23460304 Mus musculus 10090 Chordata Chordata 278 4.21e-70   NTclustered gi|28376830|gb|AC123851.4| 10090 g12280 i0 100 2.29765886287625 150 0 100 0 150 299 43038 42889 Mus musculus BAC clone RP23-323K4 from chromosome 16, complete sequence blastn 687 278 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
16121957 16121957 PRJNA816527_P_NODE_14733_length_273_cov_1.460000_g14683_i0 PRJNA816527 14733 273 1.46 3.9858 Bos taurus 9913 Chordata Chordata 95.3 4.11e-15   NTclustered gi|2587629958|ref|XM_059892232.1| 9913 g14683 i0 95 22.3846153846154 60 3 22 0 1 60 8837 8896 PREDICTED: Bos taurus uncharacterized protein (LOC132346751), mRNA blastn 6111 95.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
18670669 18670669 PRJNA816527_P_NODE_13475_length_286_cov_1.145540_g13425_i0 PRJNA816527 13475 286 1.14554 3.2762444 Mus musculus 10090 Chordata Chordata 512 1.01e-140   NTclustered gi|28201754|gb|AC127290.3| 10090 g13425 i0 98.955 2.00699300699301 287 2 100 1 1 286 176507 176221 Mus musculus BAC clone RP23-364F13 from chromosome 5, complete sequence blastn 574 512 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
21221553 21221553 PRJNA816527_P_NODE_20137_length_242_cov_0.911243_g20087_i0 PRJNA816527 20137 242 0.911243 2.20520806 Mus musculus 10090 Chordata Chordata 436 5.1499999999999985e-118   NTclustered gi|24158582|gb|AC121571.4| 10090 g20087 i0 99.174 1 242 2 100 0 1 242 107388 107629 Mus musculus BAC clone RP23-231J6 from 3, complete sequence blastn 242 436 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
23771785 23771785 PRJNA816527_P_NODE_15299_length_267_cov_1.386598_g15249_i0 PRJNA816527 15299 267 1.386598 3.70221666 Mus musculus 10090 Chordata Chordata 257 4.82e-64   NTclustered gi|354783987|gb|JN948488.1| 10090 g15249 i0 100 2.62546816479401 139 0 52 0 129 267 29805 29943 Mus musculus targeted non-conditional, lacZ-tagged mutant allele Ddx21:tm1e(EUCOMM)Wtsi; transgenic blastn 701 257 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;